miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3803 3' -55.5 NC_001650.1 + 111147 0.66 0.959219
Target:  5'- aCCCCG-GGCccucucaGGGAGGGUGuGAgGCgGg -3'
miRNA:   3'- -GGGGCaCCGa------CUUUCCCAU-CUgUGgC- -5'
3803 3' -55.5 NC_001650.1 + 37648 0.66 0.959219
Target:  5'- cCCCCGUcgGGUUccucAAGGuGGUGGACAUCc -3'
miRNA:   3'- -GGGGCA--CCGAc---UUUC-CCAUCUGUGGc -5'
3803 3' -55.5 NC_001650.1 + 142678 0.66 0.959219
Target:  5'- aCCCC--GGCUGu-GGuGGUccaAGACACCa -3'
miRNA:   3'- -GGGGcaCCGACuuUC-CCA---UCUGUGGc -5'
3803 3' -55.5 NC_001650.1 + 181320 0.66 0.957777
Target:  5'- cCCCUGggccaauagggugGGCU-AGGGGGUGGGCAUa- -3'
miRNA:   3'- -GGGGCa------------CCGAcUUUCCCAUCUGUGgc -5'
3803 3' -55.5 NC_001650.1 + 14613 0.66 0.957777
Target:  5'- cCCCUGggccaauagggugGGCU-AGGGGGUGGGCAUa- -3'
miRNA:   3'- -GGGGCa------------CCGAcUUUCCCAUCUGUGgc -5'
3803 3' -55.5 NC_001650.1 + 37219 0.66 0.957044
Target:  5'- cCCCCGaggGGCUGGcagacauauugggcaGGcGGGUGGaguGCGCCc -3'
miRNA:   3'- -GGGGCa--CCGACU---------------UU-CCCAUC---UGUGGc -5'
3803 3' -55.5 NC_001650.1 + 36418 0.66 0.955551
Target:  5'- -aCgGUGGCcgGGGAGuGcGUGGGCGCCa -3'
miRNA:   3'- ggGgCACCGa-CUUUC-C-CAUCUGUGGc -5'
3803 3' -55.5 NC_001650.1 + 131548 0.66 0.955551
Target:  5'- gCCCGggGGCUGGAcgcGGGGcggAGAaACCc -3'
miRNA:   3'- gGGGCa-CCGACUU---UCCCa--UCUgUGGc -5'
3803 3' -55.5 NC_001650.1 + 110733 0.66 0.955551
Target:  5'- -gCCGUGGCUGAGgcccgGGGGgccGugGCa- -3'
miRNA:   3'- ggGGCACCGACUU-----UCCCau-CugUGgc -5'
3803 3' -55.5 NC_001650.1 + 145582 0.66 0.955172
Target:  5'- uCCCCG-GGCUcGAGGcccgugaGGUGGGCgACCa -3'
miRNA:   3'- -GGGGCaCCGAcUUUC-------CCAUCUG-UGGc -5'
3803 3' -55.5 NC_001650.1 + 27352 0.66 0.954408
Target:  5'- uCUUCGagGGCUGcgagacccccgagcAGAGGGUGGAgGCCc -3'
miRNA:   3'- -GGGGCa-CCGAC--------------UUUCCCAUCUgUGGc -5'
3803 3' -55.5 NC_001650.1 + 15497 0.66 0.951666
Target:  5'- cCUCCaUGGCcaaugggGAGAGGGUGG--GCCGg -3'
miRNA:   3'- -GGGGcACCGa------CUUUCCCAUCugUGGC- -5'
3803 3' -55.5 NC_001650.1 + 182204 0.66 0.951666
Target:  5'- cCUCCaUGGCcaaugggGAGAGGGUGG--GCCGg -3'
miRNA:   3'- -GGGGcACCGa------CUUUCCCAUCugUGGC- -5'
3803 3' -55.5 NC_001650.1 + 162251 0.66 0.951265
Target:  5'- uCCCCGaggGGCgUGAAgcccagguagccgGGGGUccugcagaaGGAgGCCGg -3'
miRNA:   3'- -GGGGCa--CCG-ACUU-------------UCCCA---------UCUgUGGC- -5'
3803 3' -55.5 NC_001650.1 + 37476 0.66 0.947136
Target:  5'- aCCaCCGacaGGCUGcucaugaAGGGGGUGGAC-CUGg -3'
miRNA:   3'- -GG-GGCa--CCGAC-------UUUCCCAUCUGuGGC- -5'
3803 3' -55.5 NC_001650.1 + 34448 0.66 0.943228
Target:  5'- aCCCCGgGGUgGAGAGGGcggcccAGGaGCCGg -3'
miRNA:   3'- -GGGGCaCCGaCUUUCCCa-----UCUgUGGC- -5'
3803 3' -55.5 NC_001650.1 + 27137 0.66 0.943228
Target:  5'- cCCaCCGUGGCcagcaagGAguacuuugucagGAGGGUGGACAg-- -3'
miRNA:   3'- -GG-GGCACCGa------CU------------UUCCCAUCUGUggc -5'
3803 3' -55.5 NC_001650.1 + 65131 0.67 0.938671
Target:  5'- uCCCCGUcuacauGGCcGAGAGGGaggaGGAC-CUGg -3'
miRNA:   3'- -GGGGCA------CCGaCUUUCCCa---UCUGuGGC- -5'
3803 3' -55.5 NC_001650.1 + 167416 0.67 0.933885
Target:  5'- cCCCUGUGuGCaUGAGGGGGUca--GCCa -3'
miRNA:   3'- -GGGGCAC-CG-ACUUUCCCAucugUGGc -5'
3803 3' -55.5 NC_001650.1 + 167263 0.67 0.933885
Target:  5'- cCCCUGUGcGCaUGAGGGGGUca--GCCa -3'
miRNA:   3'- -GGGGCAC-CG-ACUUUCCCAucugUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.