miRNA display CGI


Results 21 - 40 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3803 3' -55.5 NC_001650.1 + 167416 0.67 0.933885
Target:  5'- cCCCUGUGuGCaUGAGGGGGUca--GCCa -3'
miRNA:   3'- -GGGGCAC-CG-ACUUUCCCAucugUGGc -5'
3803 3' -55.5 NC_001650.1 + 709 0.67 0.933885
Target:  5'- cCCCUGUGuGCaUGAGGGGGUca--GCCa -3'
miRNA:   3'- -GGGGCAC-CG-ACUUUCCCAucugUGGc -5'
3803 3' -55.5 NC_001650.1 + 93541 0.67 0.933394
Target:  5'- gCCCugCGUGGuCUGcguGGGGUcgcccacgcagacGGACGCCa -3'
miRNA:   3'- -GGG--GCACC-GACuu-UCCCA-------------UCUGUGGc -5'
3803 3' -55.5 NC_001650.1 + 135948 0.67 0.92887
Target:  5'- gCCCUGUgGGCU-AGGGGGcUAGcCGCCu -3'
miRNA:   3'- -GGGGCA-CCGAcUUUCCC-AUCuGUGGc -5'
3803 3' -55.5 NC_001650.1 + 49097 0.67 0.923625
Target:  5'- gCCUGUGaGCUGggGGauGGcgagGGAUACCa -3'
miRNA:   3'- gGGGCAC-CGACuuUC--CCa---UCUGUGGc -5'
3803 3' -55.5 NC_001650.1 + 60166 0.67 0.923625
Target:  5'- gCCCCG-GGaa-AGAGGGaGGAgGCCGg -3'
miRNA:   3'- -GGGGCaCCgacUUUCCCaUCUgUGGC- -5'
3803 3' -55.5 NC_001650.1 + 126818 0.67 0.918151
Target:  5'- gCCCG-GGCcGcAGGGGGUGGGggaGCCGc -3'
miRNA:   3'- gGGGCaCCGaC-UUUCCCAUCUg--UGGC- -5'
3803 3' -55.5 NC_001650.1 + 124892 0.67 0.918151
Target:  5'- gCUCGaGGgaGAGGGGGgagacgcGGGCACCGc -3'
miRNA:   3'- gGGGCaCCgaCUUUCCCa------UCUGUGGC- -5'
3803 3' -55.5 NC_001650.1 + 147582 0.67 0.912446
Target:  5'- gCUCCGggGGC-GAGcugcuacaggGGGGUGGACAaCCGc -3'
miRNA:   3'- -GGGGCa-CCGaCUU----------UCCCAUCUGU-GGC- -5'
3803 3' -55.5 NC_001650.1 + 91666 0.67 0.912446
Target:  5'- gCCCUacacUGGCUGAGgugggucuccAGGGUGuGCACCu -3'
miRNA:   3'- -GGGGc---ACCGACUU----------UCCCAUcUGUGGc -5'
3803 3' -55.5 NC_001650.1 + 49897 0.67 0.912446
Target:  5'- gCCCCGgggGGCgccGggGGGGaAGACGg-- -3'
miRNA:   3'- -GGGGCa--CCGa--CuuUCCCaUCUGUggc -5'
3803 3' -55.5 NC_001650.1 + 24130 0.67 0.912446
Target:  5'- uCCCCGUcaGGCUGGAcGGG--GACcCCa -3'
miRNA:   3'- -GGGGCA--CCGACUUuCCCauCUGuGGc -5'
3803 3' -55.5 NC_001650.1 + 70492 0.67 0.912446
Target:  5'- gCCC-UGGa-GAGGGGGcuggUGGACACCGu -3'
miRNA:   3'- gGGGcACCgaCUUUCCC----AUCUGUGGC- -5'
3803 3' -55.5 NC_001650.1 + 50982 0.68 0.900357
Target:  5'- gCCCGUGugcgaGCUGcgGGGGgacggGGGCGCgGg -3'
miRNA:   3'- gGGGCAC-----CGACuuUCCCa----UCUGUGgC- -5'
3803 3' -55.5 NC_001650.1 + 119991 0.68 0.900357
Target:  5'- uCCCCGUacaggGGCUGccuguAGGG-GGGCGCUa -3'
miRNA:   3'- -GGGGCA-----CCGACuu---UCCCaUCUGUGGc -5'
3803 3' -55.5 NC_001650.1 + 156132 0.68 0.885351
Target:  5'- gCCCCGggGGUcucUGAGAacagcaccagcagcGGGUGGAUGCCc -3'
miRNA:   3'- -GGGGCa-CCG---ACUUU--------------CCCAUCUGUGGc -5'
3803 3' -55.5 NC_001650.1 + 142392 0.68 0.880556
Target:  5'- uCCCCGgGGCgguggGAGAGGGgggucucuacGGGC-CCGa -3'
miRNA:   3'- -GGGGCaCCGa----CUUUCCCa---------UCUGuGGC- -5'
3803 3' -55.5 NC_001650.1 + 106828 0.68 0.880556
Target:  5'- aCCCGcuccaUGGacggUGcAGGGGUGGGCGCUGg -3'
miRNA:   3'- gGGGC-----ACCg---ACuUUCCCAUCUGUGGC- -5'
3803 3' -55.5 NC_001650.1 + 84301 0.68 0.880556
Target:  5'- aCCCG-GGCcgGGGAGGGggGGAC-CCu -3'
miRNA:   3'- gGGGCaCCGa-CUUUCCCa-UCUGuGGc -5'
3803 3' -55.5 NC_001650.1 + 73361 0.68 0.880556
Target:  5'- gCCCGUaGCUGAAAaGGGgcG-CACCc -3'
miRNA:   3'- gGGGCAcCGACUUU-CCCauCuGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.