miRNA display CGI


Results 1 - 20 of 77 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3803 3' -55.5 NC_001650.1 + 556 0.67 0.933885
Target:  5'- cCCCUGUGcGCaUGAGGGGGUca--GCCa -3'
miRNA:   3'- -GGGGCAC-CG-ACUUUCCCAucugUGGc -5'
3803 3' -55.5 NC_001650.1 + 709 0.67 0.933885
Target:  5'- cCCCUGUGuGCaUGAGGGGGUca--GCCa -3'
miRNA:   3'- -GGGGCAC-CG-ACUUUCCCAucugUGGc -5'
3803 3' -55.5 NC_001650.1 + 4792 0.7 0.783809
Target:  5'- -gCCGgGGCUcGAGGGGUAGGCcuCCGg -3'
miRNA:   3'- ggGGCaCCGAcUUUCCCAUCUGu-GGC- -5'
3803 3' -55.5 NC_001650.1 + 6273 0.7 0.810286
Target:  5'- uCCCCauugGGCaGAGGGGGUAGugGgCa -3'
miRNA:   3'- -GGGGca--CCGaCUUUCCCAUCugUgGc -5'
3803 3' -55.5 NC_001650.1 + 8605 0.72 0.702177
Target:  5'- cCCCCGUGGCUGGgcaAgagagauaauuacucAGGGaGGGCgcGCCGc -3'
miRNA:   3'- -GGGGCACCGACU---U---------------UCCCaUCUG--UGGC- -5'
3803 3' -55.5 NC_001650.1 + 12809 0.71 0.746714
Target:  5'- gCCCCaUGGCUGgcAGGGUGGu--CCu -3'
miRNA:   3'- -GGGGcACCGACuuUCCCAUCuguGGc -5'
3803 3' -55.5 NC_001650.1 + 14613 0.66 0.957777
Target:  5'- cCCCUGggccaauagggugGGCU-AGGGGGUGGGCAUa- -3'
miRNA:   3'- -GGGGCa------------CCGAcUUUCCCAUCUGUGgc -5'
3803 3' -55.5 NC_001650.1 + 15497 0.66 0.951666
Target:  5'- cCUCCaUGGCcaaugggGAGAGGGUGG--GCCGg -3'
miRNA:   3'- -GGGGcACCGa------CUUUCCCAUCugUGGC- -5'
3803 3' -55.5 NC_001650.1 + 18524 0.69 0.835365
Target:  5'- uCCCCG-GGgaGAGGGGGgagAGAaaaaACUGg -3'
miRNA:   3'- -GGGGCaCCgaCUUUCCCa--UCUg---UGGC- -5'
3803 3' -55.5 NC_001650.1 + 21025 1.1 0.003883
Target:  5'- cCCCCGUGGCUGAAAGGGUAGACACCGc -3'
miRNA:   3'- -GGGGCACCGACUUUCCCAUCUGUGGC- -5'
3803 3' -55.5 NC_001650.1 + 21608 0.74 0.568432
Target:  5'- gCCCG-GGCac--AGGGUGGGCGCCGu -3'
miRNA:   3'- gGGGCaCCGacuuUCCCAUCUGUGGC- -5'
3803 3' -55.5 NC_001650.1 + 21775 0.71 0.737176
Target:  5'- gCCCCcUGGUgggGGAcgccGGGGaGGGCGCCGg -3'
miRNA:   3'- -GGGGcACCGa--CUU----UCCCaUCUGUGGC- -5'
3803 3' -55.5 NC_001650.1 + 24130 0.67 0.912446
Target:  5'- uCCCCGUcaGGCUGGAcGGG--GACcCCa -3'
miRNA:   3'- -GGGGCA--CCGACUUuCCCauCUGuGGc -5'
3803 3' -55.5 NC_001650.1 + 25113 0.72 0.717847
Target:  5'- uCCCCGUGGCcGGGAucugcucccGGGacggcAGACACCu -3'
miRNA:   3'- -GGGGCACCGaCUUU---------CCCa----UCUGUGGc -5'
3803 3' -55.5 NC_001650.1 + 26435 0.71 0.765489
Target:  5'- gCCCCGUGGagGAGAacGUGGGCACCc -3'
miRNA:   3'- -GGGGCACCgaCUUUccCAUCUGUGGc -5'
3803 3' -55.5 NC_001650.1 + 27137 0.66 0.943228
Target:  5'- cCCaCCGUGGCcagcaagGAguacuuugucagGAGGGUGGACAg-- -3'
miRNA:   3'- -GG-GGCACCGa------CU------------UUCCCAUCUGUggc -5'
3803 3' -55.5 NC_001650.1 + 27352 0.66 0.954408
Target:  5'- uCUUCGagGGCUGcgagacccccgagcAGAGGGUGGAgGCCc -3'
miRNA:   3'- -GGGGCa-CCGAC--------------UUUCCCAUCUgUGGc -5'
3803 3' -55.5 NC_001650.1 + 28637 0.69 0.858846
Target:  5'- cCUCCagggGGCUGGugcAGGGGcUGGugGCCGa -3'
miRNA:   3'- -GGGGca--CCGACU---UUCCC-AUCugUGGC- -5'
3803 3' -55.5 NC_001650.1 + 34448 0.66 0.943228
Target:  5'- aCCCCGgGGUgGAGAGGGcggcccAGGaGCCGg -3'
miRNA:   3'- -GGGGCaCCGaCUUUCCCa-----UCUgUGGC- -5'
3803 3' -55.5 NC_001650.1 + 36418 0.66 0.955551
Target:  5'- -aCgGUGGCcgGGGAGuGcGUGGGCGCCa -3'
miRNA:   3'- ggGgCACCGa-CUUUC-C-CAUCUGUGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.