miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3803 5' -59.1 NC_001650.1 + 50933 0.65 0.867518
Target:  5'- aGCCCCCuccccu-UCUCUCggCGCGGGg -3'
miRNA:   3'- -CGGGGGcgauaguAGAGAGg-GCGCCC- -5'
3803 5' -59.1 NC_001650.1 + 59457 0.66 0.86176
Target:  5'- cCCCCCGCgccCGUCcccgcuUCUCCCcCGGc -3'
miRNA:   3'- cGGGGGCGauaGUAG------AGAGGGcGCCc -5'
3803 5' -59.1 NC_001650.1 + 95967 0.66 0.86176
Target:  5'- aGCUCCCGCUcccacaggAUCGUaugaauuccgCUCUCgaaCGCGGa -3'
miRNA:   3'- -CGGGGGCGA--------UAGUA----------GAGAGg--GCGCCc -5'
3803 5' -59.1 NC_001650.1 + 88227 0.66 0.85957
Target:  5'- gGCCUCCGCguucgagagcggaauUCAUacgaUCCUGUGGGa -3'
miRNA:   3'- -CGGGGGCGau-------------AGUAgag-AGGGCGCCC- -5'
3803 5' -59.1 NC_001650.1 + 105240 0.66 0.854392
Target:  5'- cCCCCCuCUcccUCG-CUCUCugggCCGCGGGg -3'
miRNA:   3'- cGGGGGcGAu--AGUaGAGAG----GGCGCCC- -5'
3803 5' -59.1 NC_001650.1 + 58417 0.66 0.854392
Target:  5'- aGCCCuCCGCgauggCGcccCUCUCCUcCGGGc -3'
miRNA:   3'- -CGGG-GGCGaua--GUa--GAGAGGGcGCCC- -5'
3803 5' -59.1 NC_001650.1 + 159297 0.66 0.854392
Target:  5'- aCCCCCGC-AggGUC-CUaaaggccaCCGCGGGg -3'
miRNA:   3'- cGGGGGCGaUagUAGaGAg-------GGCGCCC- -5'
3803 5' -59.1 NC_001650.1 + 130974 0.66 0.854392
Target:  5'- -aCCCCGCUccCGUCUCgcgCUCaUGGGa -3'
miRNA:   3'- cgGGGGCGAuaGUAGAGa--GGGcGCCC- -5'
3803 5' -59.1 NC_001650.1 + 153147 0.66 0.846841
Target:  5'- cGCCCCCGCaaaaCAgggaCUCgaGCGGGg -3'
miRNA:   3'- -CGGGGGCGaua-GUaga-GAGggCGCCC- -5'
3803 5' -59.1 NC_001650.1 + 144962 0.66 0.846841
Target:  5'- cUCCCCGCUcUCccCUCUCuuGaGGGu -3'
miRNA:   3'- cGGGGGCGAuAGuaGAGAGggCgCCC- -5'
3803 5' -59.1 NC_001650.1 + 180198 0.66 0.839111
Target:  5'- cGCCCCCuGaccuUCAcccacUCUCUCCUGUugcuGGGa -3'
miRNA:   3'- -CGGGGG-Cgau-AGU-----AGAGAGGGCG----CCC- -5'
3803 5' -59.1 NC_001650.1 + 75556 0.66 0.839111
Target:  5'- -aCCCC-CUGU--UCUC-CCCGUGGGu -3'
miRNA:   3'- cgGGGGcGAUAguAGAGaGGGCGCCC- -5'
3803 5' -59.1 NC_001650.1 + 13491 0.66 0.839111
Target:  5'- cGCCCCCuGaccuUCAcccacUCUCUCCUGUugcuGGGa -3'
miRNA:   3'- -CGGGGG-Cgau-AGU-----AGAGAGGGCG----CCC- -5'
3803 5' -59.1 NC_001650.1 + 118865 0.66 0.831209
Target:  5'- aGUCCuuGCacagGUCAUCUaugUCCCGCGc- -3'
miRNA:   3'- -CGGGggCGa---UAGUAGAg--AGGGCGCcc -5'
3803 5' -59.1 NC_001650.1 + 137831 0.67 0.823142
Target:  5'- gGCCgCCGCggcgCAUCUggugcCCCGCGGc -3'
miRNA:   3'- -CGGgGGCGaua-GUAGAga---GGGCGCCc -5'
3803 5' -59.1 NC_001650.1 + 28356 0.67 0.823142
Target:  5'- -aCCCCGCggugGggGUCUCgCCCG-GGGa -3'
miRNA:   3'- cgGGGGCGa---UagUAGAGaGGGCgCCC- -5'
3803 5' -59.1 NC_001650.1 + 68714 0.67 0.82151
Target:  5'- cGCCCCCucgcggagacccaGCggcaCGUCaugguggcccgggUCUCCCGgGGGg -3'
miRNA:   3'- -CGGGGG-------------CGaua-GUAG-------------AGAGGGCgCCC- -5'
3803 5' -59.1 NC_001650.1 + 46430 0.67 0.814916
Target:  5'- -aCCCCGCc--CGcCUCUCCCcgaaacucuaccGCGGGg -3'
miRNA:   3'- cgGGGGCGauaGUaGAGAGGG------------CGCCC- -5'
3803 5' -59.1 NC_001650.1 + 50644 0.67 0.814085
Target:  5'- uGCCUCCucgagagGCUGcggcUCGUUUCgccgCUCGCGGGc -3'
miRNA:   3'- -CGGGGG-------CGAU----AGUAGAGa---GGGCGCCC- -5'
3803 5' -59.1 NC_001650.1 + 103544 0.67 0.806539
Target:  5'- aGCCCCCggccacguugGCguggAUCuUC-CUCCCGUGGc -3'
miRNA:   3'- -CGGGGG----------CGa---UAGuAGaGAGGGCGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.