miRNA display CGI


Results 21 - 40 of 72 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3804 5' -57.7 NC_001650.1 + 158808 0.67 0.859959
Target:  5'- cCCcUGAGGAGGGUcagGUCCcCCGcccuGCCc -3'
miRNA:   3'- -GGcACUCCUCCCA---CAGGuGGUac--CGG- -5'
3804 5' -57.7 NC_001650.1 + 89064 0.67 0.859959
Target:  5'- cCCaUGAGGcGGGUGaCCGCgGacUGGCUc -3'
miRNA:   3'- -GGcACUCCuCCCACaGGUGgU--ACCGG- -5'
3804 5' -57.7 NC_001650.1 + 58182 0.67 0.859959
Target:  5'- gCCGUG-GGAGGGUcUUCGCC---GCCc -3'
miRNA:   3'- -GGCACuCCUCCCAcAGGUGGuacCGG- -5'
3804 5' -57.7 NC_001650.1 + 42537 0.67 0.859959
Target:  5'- -gGUGAGGAGGaccgCCGCaCGgagGGCCu -3'
miRNA:   3'- ggCACUCCUCCcacaGGUG-GUa--CCGG- -5'
3804 5' -57.7 NC_001650.1 + 109724 0.67 0.851719
Target:  5'- aCgGUGAGGAGGGUGUgggagugCCACgCGaaggaggGGUa -3'
miRNA:   3'- -GgCACUCCUCCCACA-------GGUG-GUa------CCGg -5'
3804 5' -57.7 NC_001650.1 + 109818 0.67 0.844811
Target:  5'- -gGUGucGGGGGUGaCCucguCCAggaUGGCCa -3'
miRNA:   3'- ggCACucCUCCCACaGGu---GGU---ACCGG- -5'
3804 5' -57.7 NC_001650.1 + 86112 0.67 0.844811
Target:  5'- uCCGccGAGGAGGaGUuuagccaUCCGCCAUGGgUa -3'
miRNA:   3'- -GGCa-CUCCUCC-CAc------AGGUGGUACCgG- -5'
3804 5' -57.7 NC_001650.1 + 167695 0.67 0.844034
Target:  5'- -gGUGGGGuggccaucuugguGGGGUGgCCAUCuuggugggGUGGCCa -3'
miRNA:   3'- ggCACUCC-------------UCCCACaGGUGG--------UACCGG- -5'
3804 5' -57.7 NC_001650.1 + 2844 0.67 0.839337
Target:  5'- uCCGcGAGGAGGGggggagagaggccggCCGCCcgGGUUc -3'
miRNA:   3'- -GGCaCUCCUCCCaca------------GGUGGuaCCGG- -5'
3804 5' -57.7 NC_001650.1 + 169551 0.67 0.839337
Target:  5'- uCCGcGAGGAGGGggggagagaggccggCCGCCcgGGUUc -3'
miRNA:   3'- -GGCaCUCCUCCCaca------------GGUGGuaCCGG- -5'
3804 5' -57.7 NC_001650.1 + 989 0.67 0.836964
Target:  5'- -gGUGGGGuggcaucuugguGGGGUGgCCAUCuuggugggGUGGCCa -3'
miRNA:   3'- ggCACUCC------------UCCCACaGGUGG--------UACCGG- -5'
3804 5' -57.7 NC_001650.1 + 101779 0.67 0.836964
Target:  5'- --aUGAGGggcAGGGgGUCC-CCAcGGCCg -3'
miRNA:   3'- ggcACUCC---UCCCaCAGGuGGUaCCGG- -5'
3804 5' -57.7 NC_001650.1 + 111613 0.68 0.828944
Target:  5'- gCGUGcGGAucaUGUCCACCGUGGgCg -3'
miRNA:   3'- gGCACuCCUcccACAGGUGGUACCgG- -5'
3804 5' -57.7 NC_001650.1 + 87573 0.68 0.820758
Target:  5'- cCCGgaaAGGAGGccgcgaUGggCACCGUGGCCg -3'
miRNA:   3'- -GGCac-UCCUCCc-----ACagGUGGUACCGG- -5'
3804 5' -57.7 NC_001650.1 + 58155 0.68 0.820758
Target:  5'- gCCG-GAuGGGGGGUGgUgGCgAUGGCUg -3'
miRNA:   3'- -GGCaCU-CCUCCCACaGgUGgUACCGG- -5'
3804 5' -57.7 NC_001650.1 + 52289 0.68 0.817438
Target:  5'- aCCGUGAGcAGGGcccacagcaggaaGcCCGCCcUGGCCc -3'
miRNA:   3'- -GGCACUCcUCCCa------------CaGGUGGuACCGG- -5'
3804 5' -57.7 NC_001650.1 + 126898 0.68 0.812412
Target:  5'- ---cGGGuGGGGGUG-CCACCGgcgcuacGGCCg -3'
miRNA:   3'- ggcaCUC-CUCCCACaGGUGGUa------CCGG- -5'
3804 5' -57.7 NC_001650.1 + 110843 0.68 0.812412
Target:  5'- cCCGUcauagGGGGAGGGUGcgCCccuuuucaGCUAcgGGCCc -3'
miRNA:   3'- -GGCA-----CUCCUCCCACa-GG--------UGGUa-CCGG- -5'
3804 5' -57.7 NC_001650.1 + 58643 0.68 0.812412
Target:  5'- -gGUGGGGuuGGGGggcagguggugGUCCGCCcUGGUCc -3'
miRNA:   3'- ggCACUCC--UCCCa----------CAGGUGGuACCGG- -5'
3804 5' -57.7 NC_001650.1 + 43694 0.68 0.811569
Target:  5'- gCCaGUGAGGcggccacAGGGUcugCCACCAgaUGGCg -3'
miRNA:   3'- -GG-CACUCC-------UCCCAca-GGUGGU--ACCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.