miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3805 3' -46.6 NC_001650.1 + 101729 0.66 0.999974
Target:  5'- gACuucUUCAccUACAUCAAGAggUUCCAGGg -3'
miRNA:   3'- aUGu--GAGU--AUGUAGUUCUa-GAGGUCU- -5'
3805 3' -46.6 NC_001650.1 + 143103 0.66 0.999964
Target:  5'- gACcUUCGUggagaacaACGUCAAGAUC-CCGGAc -3'
miRNA:   3'- aUGuGAGUA--------UGUAGUUCUAGaGGUCU- -5'
3805 3' -46.6 NC_001650.1 + 54090 0.66 0.999952
Target:  5'- --uGCUCGUAgGUCAgcagcuuuuuggGGAUCUCCGc- -3'
miRNA:   3'- augUGAGUAUgUAGU------------UCUAGAGGUcu -5'
3805 3' -46.6 NC_001650.1 + 64041 0.66 0.999935
Target:  5'- -uCGCgggCA-ACGUCGGGGUCUCCuGGAa -3'
miRNA:   3'- auGUGa--GUaUGUAGUUCUAGAGG-UCU- -5'
3805 3' -46.6 NC_001650.1 + 66214 0.66 0.999935
Target:  5'- cGCGCUCAUAagcgccauCAUCAAGAcaggCUCCc-- -3'
miRNA:   3'- aUGUGAGUAU--------GUAGUUCUa---GAGGucu -5'
3805 3' -46.6 NC_001650.1 + 183858 0.66 0.999935
Target:  5'- -cCACUauugcgAUAUAUCAGGAUUgcgCCAGAg -3'
miRNA:   3'- auGUGAg-----UAUGUAGUUCUAGa--GGUCU- -5'
3805 3' -46.6 NC_001650.1 + 17151 0.66 0.999935
Target:  5'- -cCACUauugcgAUAUAUCAGGAUUgcgCCAGAg -3'
miRNA:   3'- auGUGAg-----UAUGUAGUUCUAGa--GGUCU- -5'
3805 3' -46.6 NC_001650.1 + 97921 0.66 0.999934
Target:  5'- ---cCUCGU-CAUCcgagucaGAGAUCUCCAGGc -3'
miRNA:   3'- auguGAGUAuGUAG-------UUCUAGAGGUCU- -5'
3805 3' -46.6 NC_001650.1 + 121627 0.67 0.999887
Target:  5'- -cCACUCcUACcUCAGGAUCUuccugcCCAGGc -3'
miRNA:   3'- auGUGAGuAUGuAGUUCUAGA------GGUCU- -5'
3805 3' -46.6 NC_001650.1 + 56345 0.67 0.999853
Target:  5'- aGCACag--GCG-CGAGAUCUCCAGc -3'
miRNA:   3'- aUGUGaguaUGUaGUUCUAGAGGUCu -5'
3805 3' -46.6 NC_001650.1 + 143534 0.67 0.999755
Target:  5'- aACACUgugCAU-CGUCAGGGUUgaUCCAGGu -3'
miRNA:   3'- aUGUGA---GUAuGUAGUUCUAG--AGGUCU- -5'
3805 3' -46.6 NC_001650.1 + 64012 0.69 0.999046
Target:  5'- cUACAC-CGgaguuuUCAGGGUCUCCGGGg -3'
miRNA:   3'- -AUGUGaGUaugu--AGUUCUAGAGGUCU- -5'
3805 3' -46.6 NC_001650.1 + 68002 0.69 0.99883
Target:  5'- cGCACUCGUACAggCA----CUCCAGGa -3'
miRNA:   3'- aUGUGAGUAUGUa-GUucuaGAGGUCU- -5'
3805 3' -46.6 NC_001650.1 + 84409 0.69 0.99883
Target:  5'- gGC-CUgA-GCAUCGGGGUCUCCAGc -3'
miRNA:   3'- aUGuGAgUaUGUAGUUCUAGAGGUCu -5'
3805 3' -46.6 NC_001650.1 + 115148 0.7 0.996471
Target:  5'- cGCGCUCcccuacUGCcgCGAGGUCUCCcuGGAg -3'
miRNA:   3'- aUGUGAGu-----AUGuaGUUCUAGAGG--UCU- -5'
3805 3' -46.6 NC_001650.1 + 18059 1.09 0.024788
Target:  5'- aUACACUCAUACAUCAAGAUCUCCAGAg -3'
miRNA:   3'- -AUGUGAGUAUGUAGUUCUAGAGGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.