miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3805 5' -56.9 NC_001650.1 + 94309 0.66 0.908451
Target:  5'- gGGUCUG-GGGCCUCg--GUcAGGGUg -3'
miRNA:   3'- -CCGGACaCCCGGGGacaCAuUUCCAg -5'
3805 5' -56.9 NC_001650.1 + 131926 0.66 0.895965
Target:  5'- gGGCuuccugCUGUGGGCCCUgcucacgGUGgaccacguGGUCc -3'
miRNA:   3'- -CCG------GACACCCGGGGa------CACauuu----CCAG- -5'
3805 5' -56.9 NC_001650.1 + 60281 0.66 0.889384
Target:  5'- -cCCcGUGGGCCCCac-GUAggagacGAGGUCg -3'
miRNA:   3'- ccGGaCACCCGGGGacaCAU------UUCCAG- -5'
3805 5' -56.9 NC_001650.1 + 100225 0.66 0.889384
Target:  5'- cGGUCUGcGGGuUCCCcGUGUGGGGaGUg -3'
miRNA:   3'- -CCGGACaCCC-GGGGaCACAUUUC-CAg -5'
3805 5' -56.9 NC_001650.1 + 32134 0.66 0.885329
Target:  5'- cGCCa---GGCCUCUGUGUAAaacaagacaagauggGGGUCg -3'
miRNA:   3'- cCGGacacCCGGGGACACAUU---------------UCCAG- -5'
3805 5' -56.9 NC_001650.1 + 54396 0.66 0.882582
Target:  5'- aGGUagaaguucaUGUGGGCCCUguaggGUGUGAGccaGUCg -3'
miRNA:   3'- -CCGg--------ACACCCGGGGa----CACAUUUc--CAG- -5'
3805 5' -56.9 NC_001650.1 + 39581 0.66 0.882582
Target:  5'- uGGCCU---GGCCCCgGgacaGUAAGGGUUu -3'
miRNA:   3'- -CCGGAcacCCGGGGaCa---CAUUUCCAG- -5'
3805 5' -56.9 NC_001650.1 + 52077 0.66 0.875563
Target:  5'- cGGCCUcgGUGGGgCCCaggGUGUAGuagcugccGGUg -3'
miRNA:   3'- -CCGGA--CACCCgGGGa--CACAUUu-------CCAg -5'
3805 5' -56.9 NC_001650.1 + 41559 0.67 0.871249
Target:  5'- aGCCgggGUcucagguaccaaaauGGGCCCUaUGUGUuuuGGGUCa -3'
miRNA:   3'- cCGGa--CA---------------CCCGGGG-ACACAuu-UCCAG- -5'
3805 5' -56.9 NC_001650.1 + 172454 0.67 0.868332
Target:  5'- gGGUCUGagugcauggGGGUCCCgGUGgucgcgguGAGGUCc -3'
miRNA:   3'- -CCGGACa--------CCCGGGGaCACau------UUCCAG- -5'
3805 5' -56.9 NC_001650.1 + 5747 0.67 0.868332
Target:  5'- gGGUCUGagugcauggGGGUCCCgGUGgucgcgguGAGGUCc -3'
miRNA:   3'- -CCGGACa--------CCCGGGGaCACau------UUCCAG- -5'
3805 5' -56.9 NC_001650.1 + 19311 0.67 0.868332
Target:  5'- cGGCCgcgGUGGGgCCCgggggGUG---GGGUg -3'
miRNA:   3'- -CCGGa--CACCCgGGGa----CACauuUCCAg -5'
3805 5' -56.9 NC_001650.1 + 139839 0.67 0.858623
Target:  5'- aGGCCaGUGGGUCCgUGcuggGUucaggaagcaauccAGGGGUCc -3'
miRNA:   3'- -CCGGaCACCCGGGgACa---CA--------------UUUCCAG- -5'
3805 5' -56.9 NC_001650.1 + 136690 0.67 0.845419
Target:  5'- cGCuCUGUGGGCCC----GUAuGGGUCu -3'
miRNA:   3'- cCG-GACACCCGGGgacaCAUuUCCAG- -5'
3805 5' -56.9 NC_001650.1 + 167244 0.67 0.845419
Target:  5'- uGCCauuuugGUGGGaagcCCCCUGUGcgcaugaGGGGGUCa -3'
miRNA:   3'- cCGGa-----CACCC----GGGGACACa------UUUCCAG- -5'
3805 5' -56.9 NC_001650.1 + 537 0.67 0.845419
Target:  5'- uGCCauuuugGUGGGaagcCCCCUGUGcgcaugaGGGGGUCa -3'
miRNA:   3'- cCGGa-----CACCC----GGGGACACa------UUUCCAG- -5'
3805 5' -56.9 NC_001650.1 + 163581 0.67 0.837395
Target:  5'- gGGUCUGgaaaGGUCCCUGUaGUGAcagGGGUg -3'
miRNA:   3'- -CCGGACac--CCGGGGACA-CAUU---UCCAg -5'
3805 5' -56.9 NC_001650.1 + 96844 0.68 0.829189
Target:  5'- uGGCCUGU---CCCCcGUGaUAGGGGUCc -3'
miRNA:   3'- -CCGGACAcccGGGGaCAC-AUUUCCAG- -5'
3805 5' -56.9 NC_001650.1 + 121905 0.68 0.820809
Target:  5'- uGGCCUGggcucauuuuUGGGucucCCCCUcGggagaGUGAAGGUCc -3'
miRNA:   3'- -CCGGAC----------ACCC----GGGGA-Ca----CAUUUCCAG- -5'
3805 5' -56.9 NC_001650.1 + 69016 0.68 0.803553
Target:  5'- gGGCCUGUGcaGGCCUgaCUuUGU-GAGGUCc -3'
miRNA:   3'- -CCGGACAC--CCGGG--GAcACAuUUCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.