miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3805 5' -56.9 NC_001650.1 + 18096 1.12 0.001599
Target:  5'- cGGCCUGUGGGCCCCUGUGUAAAGGUCa -3'
miRNA:   3'- -CCGGACACCCGGGGACACAUUUCCAG- -5'
3805 5' -56.9 NC_001650.1 + 57345 0.75 0.409051
Target:  5'- cGCCUGUGGcGCCgCCUG-GUGGccguuguGGGUCa -3'
miRNA:   3'- cCGGACACC-CGG-GGACaCAUU-------UCCAG- -5'
3805 5' -56.9 NC_001650.1 + 83783 0.75 0.409905
Target:  5'- cGCCguccggGGGCCCCUGg--GAGGGUCu -3'
miRNA:   3'- cCGGaca---CCCGGGGACacaUUUCCAG- -5'
3805 5' -56.9 NC_001650.1 + 132403 0.74 0.46314
Target:  5'- cGGCCUGgccGGGCgCgaGgagGUGGAGGUCu -3'
miRNA:   3'- -CCGGACa--CCCGgGgaCa--CAUUUCCAG- -5'
3805 5' -56.9 NC_001650.1 + 24068 0.74 0.480742
Target:  5'- gGGCCUGUGGGCggCCCUGgccgagauggccaUGgcggggauGAGGUCc -3'
miRNA:   3'- -CCGGACACCCG--GGGAC-------------ACau------UUCCAG- -5'
3805 5' -56.9 NC_001650.1 + 112760 0.73 0.519779
Target:  5'- aGCCUGUGGGCgUUCUGUGggGGGGc- -3'
miRNA:   3'- cCGGACACCCG-GGGACACauUUCCag -5'
3805 5' -56.9 NC_001650.1 + 690 0.73 0.549113
Target:  5'- uGCCaucuugGUGGGaagaCCCCUGUGUGcaugagGGGGUCa -3'
miRNA:   3'- cCGGa-----CACCC----GGGGACACAU------UUCCAG- -5'
3805 5' -56.9 NC_001650.1 + 802 0.73 0.549113
Target:  5'- uGCCaucuugGUGGGaaguCCCCUGUGUGuaugagGGGGUCa -3'
miRNA:   3'- cCGGa-----CACCC----GGGGACACAU------UUCCAG- -5'
3805 5' -56.9 NC_001650.1 + 167397 0.73 0.549113
Target:  5'- uGCCaucuugGUGGGaagaCCCCUGUGUGcaugagGGGGUCa -3'
miRNA:   3'- cCGGa-----CACCC----GGGGACACAU------UUCCAG- -5'
3805 5' -56.9 NC_001650.1 + 57094 0.73 0.549113
Target:  5'- gGGCCcgGUGGucuCCCCUGUGUGggaaaAGGGUg -3'
miRNA:   3'- -CCGGa-CACCc--GGGGACACAU-----UUCCAg -5'
3805 5' -56.9 NC_001650.1 + 167509 0.73 0.549113
Target:  5'- uGCCaucuugGUGGGaaguCCCCUGUGUGuaugagGGGGUCa -3'
miRNA:   3'- cCGGa-----CACCC----GGGGACACAU------UUCCAG- -5'
3805 5' -56.9 NC_001650.1 + 130770 0.72 0.559008
Target:  5'- aGGCUg--GGGCCCCUG-GUGGAGaaGUCc -3'
miRNA:   3'- -CCGGacaCCCGGGGACaCAUUUC--CAG- -5'
3805 5' -56.9 NC_001650.1 + 176181 0.72 0.599023
Target:  5'- gGGCCUGUGGGUauuacucaaugCCCaGUG---GGGUCu -3'
miRNA:   3'- -CCGGACACCCG-----------GGGaCACauuUCCAG- -5'
3805 5' -56.9 NC_001650.1 + 9474 0.72 0.599023
Target:  5'- gGGCCUGUGGGUauuacucaaugCCCaGUG---GGGUCu -3'
miRNA:   3'- -CCGGACACCCG-----------GGGaCACauuUCCAG- -5'
3805 5' -56.9 NC_001650.1 + 22159 0.72 0.609102
Target:  5'- cGGCCUGcUGGGCUaCCUGUGc--AGGcUCu -3'
miRNA:   3'- -CCGGAC-ACCCGG-GGACACauuUCC-AG- -5'
3805 5' -56.9 NC_001650.1 + 119944 0.69 0.738835
Target:  5'- uGCCccgGGGCUCCUGcgGgugGAAGGUCu -3'
miRNA:   3'- cCGGacaCCCGGGGACa-Ca--UUUCCAG- -5'
3805 5' -56.9 NC_001650.1 + 40134 0.69 0.757912
Target:  5'- cGCCacagaUGGGCgUCUGUGUAGAGGa- -3'
miRNA:   3'- cCGGac---ACCCGgGGACACAUUUCCag -5'
3805 5' -56.9 NC_001650.1 + 47490 0.69 0.767292
Target:  5'- uGGCCg--GGGUCUCUGacacgGUGGGGGUUu -3'
miRNA:   3'- -CCGGacaCCCGGGGACa----CAUUUCCAG- -5'
3805 5' -56.9 NC_001650.1 + 114520 0.69 0.776555
Target:  5'- gGGCCUGcUGGuaCCCcGUGgu--GGUCg -3'
miRNA:   3'- -CCGGAC-ACCcgGGGaCACauuuCCAG- -5'
3805 5' -56.9 NC_001650.1 + 426 0.68 0.785692
Target:  5'- aGCCaucuugGUGGgaaGCCCCUGUGcauaagaGGGGGUCa -3'
miRNA:   3'- cCGGa-----CACC---CGGGGACACa------UUUCCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.