miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3816 3' -53.5 NC_001650.1 + 16446 0.66 0.967588
Target:  5'- -gGCccGGGGGUG--GGCCcAACCGc- -3'
miRNA:   3'- uaCGuaCCCCCACaaUCGG-UUGGUug -5'
3816 3' -53.5 NC_001650.1 + 183153 0.66 0.967588
Target:  5'- -gGCccGGGGGUG--GGCCcAACCGc- -3'
miRNA:   3'- uaCGuaCCCCCACaaUCGG-UUGGUug -5'
3816 3' -53.5 NC_001650.1 + 47854 0.66 0.966948
Target:  5'- cAUGCuugaGGGGGUGUUucugggcauaguGCUGACCAu- -3'
miRNA:   3'- -UACGua--CCCCCACAAu-----------CGGUUGGUug -5'
3816 3' -53.5 NC_001650.1 + 89757 0.66 0.964296
Target:  5'- uUGCGUGGGgcuGGUGUcugGGUaCGGCCGAg -3'
miRNA:   3'- uACGUACCC---CCACAa--UCG-GUUGGUUg -5'
3816 3' -53.5 NC_001650.1 + 167422 0.66 0.964296
Target:  5'- uGUGCAUGaGGGG-GUcAGCCAugUu-- -3'
miRNA:   3'- -UACGUAC-CCCCaCAaUCGGUugGuug -5'
3816 3' -53.5 NC_001650.1 + 715 0.66 0.964296
Target:  5'- uGUGCAUGaGGGG-GUcAGCCAugUu-- -3'
miRNA:   3'- -UACGUAC-CCCCaCAaUCGGUugGuug -5'
3816 3' -53.5 NC_001650.1 + 79146 0.66 0.957025
Target:  5'- -gGCAucUGGGGGUGgUGGCgGuuCCAAg -3'
miRNA:   3'- uaCGU--ACCCCCACaAUCGgUu-GGUUg -5'
3816 3' -53.5 NC_001650.1 + 73416 0.66 0.953035
Target:  5'- ---gGUGGGGGcGgcccagGGCCAGCaCAACg -3'
miRNA:   3'- uacgUACCCCCaCaa----UCGGUUG-GUUG- -5'
3816 3' -53.5 NC_001650.1 + 52165 0.67 0.948803
Target:  5'- -cGCGUcGGGgacGGUGUUgggguacucGGCCGcgGCCAGCg -3'
miRNA:   3'- uaCGUA-CCC---CCACAA---------UCGGU--UGGUUG- -5'
3816 3' -53.5 NC_001650.1 + 126826 0.67 0.948803
Target:  5'- -cGCA-GGGGGUGggggAGCCGcagGCCccACa -3'
miRNA:   3'- uaCGUaCCCCCACaa--UCGGU---UGGu-UG- -5'
3816 3' -53.5 NC_001650.1 + 66439 0.67 0.948803
Target:  5'- -aGCGggagaGGGGGaGggcGCCGACCGGCu -3'
miRNA:   3'- uaCGUa----CCCCCaCaauCGGUUGGUUG- -5'
3816 3' -53.5 NC_001650.1 + 110472 0.67 0.948803
Target:  5'- cUGaCAUGGaGGUGg-AGCCGGCCAGg -3'
miRNA:   3'- uAC-GUACCcCCACaaUCGGUUGGUUg -5'
3816 3' -53.5 NC_001650.1 + 67962 0.67 0.944326
Target:  5'- cUGCAcgGGcGGGUGUccgaGGCCAagACCAGg -3'
miRNA:   3'- uACGUa-CC-CCCACAa---UCGGU--UGGUUg -5'
3816 3' -53.5 NC_001650.1 + 9194 0.67 0.9396
Target:  5'- -gGCuAUGGGGGUGUguggguggugGGCUAcuguCCAAUa -3'
miRNA:   3'- uaCG-UACCCCCACAa---------UCGGUu---GGUUG- -5'
3816 3' -53.5 NC_001650.1 + 63327 0.67 0.9396
Target:  5'- gGUGCuUGGGGGcGUUGucgcgcGCCGcccCCAGCg -3'
miRNA:   3'- -UACGuACCCCCaCAAU------CGGUu--GGUUG- -5'
3816 3' -53.5 NC_001650.1 + 38582 0.67 0.9396
Target:  5'- -gGC-UGGGGGUGcccuucaacaUAGCCAGCUAc- -3'
miRNA:   3'- uaCGuACCCCCACa---------AUCGGUUGGUug -5'
3816 3' -53.5 NC_001650.1 + 175901 0.67 0.9396
Target:  5'- -gGCuAUGGGGGUGUguggguggugGGCUAcuguCCAAUa -3'
miRNA:   3'- uaCG-UACCCCCACAa---------UCGGUu---GGUUG- -5'
3816 3' -53.5 NC_001650.1 + 35167 0.67 0.934623
Target:  5'- -cGCcgcGGGGGUGgu-GCCccacACCAGCa -3'
miRNA:   3'- uaCGua-CCCCCACaauCGGu---UGGUUG- -5'
3816 3' -53.5 NC_001650.1 + 42569 0.67 0.933081
Target:  5'- -gGCcUGGGGGUGUUuugcuucgcgcgggGGCCcccgaGGCCGAa -3'
miRNA:   3'- uaCGuACCCCCACAA--------------UCGG-----UUGGUUg -5'
3816 3' -53.5 NC_001650.1 + 87802 0.67 0.929394
Target:  5'- gGUGUGUGGGuGaGUGaUGGCaggAGCCAGCa -3'
miRNA:   3'- -UACGUACCC-C-CACaAUCGg--UUGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.