miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3823 5' -54 NC_001650.1 + 53679 0.67 0.952926
Target:  5'- -cCUGAgGAUcuccucGCCCaGCAGCUCCa -3'
miRNA:   3'- gaGACUgUUGucu---UGGGcCGUCGAGG- -5'
3823 5' -54 NC_001650.1 + 53706 0.67 0.952926
Target:  5'- gCUCUcGACcaauCAGAGCgCGGCcgagagGGCUCUg -3'
miRNA:   3'- -GAGA-CUGuu--GUCUUGgGCCG------UCGAGG- -5'
3823 5' -54 NC_001650.1 + 156424 0.67 0.952926
Target:  5'- -gCUGGCcgGGCAgGAGCCgCGGCAcaGCUCg -3'
miRNA:   3'- gaGACUG--UUGU-CUUGG-GCCGU--CGAGg -5'
3823 5' -54 NC_001650.1 + 29149 0.67 0.952926
Target:  5'- gCUCcaggGACGGCAGGcACCUGGgccuGCUCUg -3'
miRNA:   3'- -GAGa---CUGUUGUCU-UGGGCCgu--CGAGG- -5'
3823 5' -54 NC_001650.1 + 43474 0.67 0.952926
Target:  5'- gCUCUcGACcaauCAGAGCgCGGCugagagGGCUCUg -3'
miRNA:   3'- -GAGA-CUGuu--GUCUUGgGCCG------UCGAGG- -5'
3823 5' -54 NC_001650.1 + 107972 0.67 0.948803
Target:  5'- aUCUGGCAuguaaauGGACUgguaCGGCGGCUCa -3'
miRNA:   3'- gAGACUGUugu----CUUGG----GCCGUCGAGg -5'
3823 5' -54 NC_001650.1 + 59216 0.67 0.948803
Target:  5'- cCUCUGGCGAUcgAGAGCCUcucGCAGauggUCCu -3'
miRNA:   3'- -GAGACUGUUG--UCUUGGGc--CGUCg---AGG- -5'
3823 5' -54 NC_001650.1 + 130021 0.67 0.948803
Target:  5'- -cCUGA--GCcuGGGcgGCCCGGgAGCUCCa -3'
miRNA:   3'- gaGACUguUG--UCU--UGGGCCgUCGAGG- -5'
3823 5' -54 NC_001650.1 + 75045 0.67 0.948803
Target:  5'- cCUCUGAaacGCAGAgcgggaccGCCUGGCucGCgUCCu -3'
miRNA:   3'- -GAGACUgu-UGUCU--------UGGGCCGu-CG-AGG- -5'
3823 5' -54 NC_001650.1 + 151532 0.67 0.948803
Target:  5'- gCUCUGGCu-CAGGuucaaGCuCUGGUucaGGCUCCg -3'
miRNA:   3'- -GAGACUGuuGUCU-----UG-GGCCG---UCGAGG- -5'
3823 5' -54 NC_001650.1 + 151490 0.67 0.948803
Target:  5'- gCUCUGGCu-CAGGuucaaGCuCUGGUucaGGCUCCg -3'
miRNA:   3'- -GAGACUGuuGUCU-----UG-GGCCG---UCGAGG- -5'
3823 5' -54 NC_001650.1 + 151448 0.67 0.948803
Target:  5'- gCUCUGGCu-CAGGuucaaGCuCUGGUucaGGCUCCg -3'
miRNA:   3'- -GAGACUGuuGUCU-----UG-GGCCG---UCGAGG- -5'
3823 5' -54 NC_001650.1 + 126615 0.67 0.948803
Target:  5'- gCUCaagGACAucaAGAACUCGcaGCAGUUCCc -3'
miRNA:   3'- -GAGa--CUGUug-UCUUGGGC--CGUCGAGG- -5'
3823 5' -54 NC_001650.1 + 146903 0.67 0.947521
Target:  5'- gCUCUGgGCggUAGc-CCCGGCAGUggauaaacagggagUCCg -3'
miRNA:   3'- -GAGAC-UGuuGUCuuGGGCCGUCG--------------AGG- -5'
3823 5' -54 NC_001650.1 + 27193 0.67 0.939857
Target:  5'- -gCUGgugaggcaGCAGCAGGGCgUGGgGGCUCUg -3'
miRNA:   3'- gaGAC--------UGUUGUCUUGgGCCgUCGAGG- -5'
3823 5' -54 NC_001650.1 + 48974 0.67 0.939857
Target:  5'- -cCUGACugAGCuGGGCCCGGgCcuguacuGCUCCa -3'
miRNA:   3'- gaGACUG--UUGuCUUGGGCC-Gu------CGAGG- -5'
3823 5' -54 NC_001650.1 + 52366 0.67 0.939857
Target:  5'- gUCUGACccccACAGGGCUugggugacguCGGCGGCcggCCa -3'
miRNA:   3'- gAGACUGu---UGUCUUGG----------GCCGUCGa--GG- -5'
3823 5' -54 NC_001650.1 + 107314 0.67 0.939857
Target:  5'- uUCUG-CAGCAGGucccccacggagACCCccgggGGCAGCcCCa -3'
miRNA:   3'- gAGACuGUUGUCU------------UGGG-----CCGUCGaGG- -5'
3823 5' -54 NC_001650.1 + 97728 0.67 0.939857
Target:  5'- aUCUGGC--CGGucGCCCugcaGCAGCUCCu -3'
miRNA:   3'- gAGACUGuuGUCu-UGGGc---CGUCGAGG- -5'
3823 5' -54 NC_001650.1 + 72020 0.67 0.939857
Target:  5'- -gUUGACAACAG-ACCCaauaGCGGC-CCu -3'
miRNA:   3'- gaGACUGUUGUCuUGGGc---CGUCGaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.