miRNA display CGI


Results 21 - 40 of 82 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3825 5' -65.6 NC_001650.1 + 153205 0.66 0.471789
Target:  5'- gGGCGCCCCCcGCCccaGCC-AGGCc--- -3'
miRNA:   3'- -UCGCGGGGGaCGGc--CGGcUCCGcuau -5'
3825 5' -65.6 NC_001650.1 + 30522 0.66 0.471789
Target:  5'- uGCGCgUCCUGCUucGCgGAGGCGGc- -3'
miRNA:   3'- uCGCGgGGGACGGc-CGgCUCCGCUau -5'
3825 5' -65.6 NC_001650.1 + 51826 0.67 0.463029
Target:  5'- cGCGCCCggCCagGCCgucaaagagcucGGCCGAgGGCGAc- -3'
miRNA:   3'- uCGCGGG--GGa-CGG------------CCGGCU-CCGCUau -5'
3825 5' -65.6 NC_001650.1 + 28121 0.67 0.463029
Target:  5'- aGGUGCCCCUggGCaaccuGGCCGGGGUc--- -3'
miRNA:   3'- -UCGCGGGGGa-CGg----CCGGCUCCGcuau -5'
3825 5' -65.6 NC_001650.1 + 79046 0.67 0.463029
Target:  5'- gGGagaGCCCUCUGgagaggauagCGGCCGAGGCGu-- -3'
miRNA:   3'- -UCg--CGGGGGACg---------GCCGGCUCCGCuau -5'
3825 5' -65.6 NC_001650.1 + 51020 0.67 0.460418
Target:  5'- cGGCgGCCCCCUcucagaucaagGUgGGCgugacccuggugcgCGAGGCGAUGc -3'
miRNA:   3'- -UCG-CGGGGGA-----------CGgCCG--------------GCUCCGCUAU- -5'
3825 5' -65.6 NC_001650.1 + 57944 0.67 0.460418
Target:  5'- gGGCGgCaCCCUcagcugggcgggagGCgCGGCCGGGGCGu-- -3'
miRNA:   3'- -UCGCgG-GGGA--------------CG-GCCGGCUCCGCuau -5'
3825 5' -65.6 NC_001650.1 + 50640 0.67 0.454355
Target:  5'- uGCGCCCCCUcgagggGCCGGUgcccgCGGGGgGc-- -3'
miRNA:   3'- uCGCGGGGGA------CGGCCG-----GCUCCgCuau -5'
3825 5' -65.6 NC_001650.1 + 26816 0.67 0.454355
Target:  5'- cGCGCCCCUUcgaGuuGGCCGAccuggGGCa--- -3'
miRNA:   3'- uCGCGGGGGA---CggCCGGCU-----CCGcuau -5'
3825 5' -65.6 NC_001650.1 + 116987 0.67 0.454355
Target:  5'- cGCGCCUCUcGCUGGCC-AGGCu--- -3'
miRNA:   3'- uCGCGGGGGaCGGCCGGcUCCGcuau -5'
3825 5' -65.6 NC_001650.1 + 28779 0.67 0.44577
Target:  5'- cGGUGCCgCC-GCCGGagGGGGCGGg- -3'
miRNA:   3'- -UCGCGGgGGaCGGCCggCUCCGCUau -5'
3825 5' -65.6 NC_001650.1 + 76559 0.67 0.44577
Target:  5'- cGCGCCCCaggGCCucuuGGCCGgcAGGCa--- -3'
miRNA:   3'- uCGCGGGGga-CGG----CCGGC--UCCGcuau -5'
3825 5' -65.6 NC_001650.1 + 107832 0.67 0.443213
Target:  5'- cGUGCUCaCCUGCUcugacaaaaaggggGGCgGGGGCGAg- -3'
miRNA:   3'- uCGCGGG-GGACGG--------------CCGgCUCCGCUau -5'
3825 5' -65.6 NC_001650.1 + 50305 0.67 0.437276
Target:  5'- gGGCGCCCCCaGCUGuacucugggcGCCGcggucccagGGGCGGc- -3'
miRNA:   3'- -UCGCGGGGGaCGGC----------CGGC---------UCCGCUau -5'
3825 5' -65.6 NC_001650.1 + 94200 0.67 0.437276
Target:  5'- gGGCGCgCgCU-CCGGCCGAccggcGGCGAa- -3'
miRNA:   3'- -UCGCGgGgGAcGGCCGGCU-----CCGCUau -5'
3825 5' -65.6 NC_001650.1 + 13083 0.67 0.428877
Target:  5'- cGGCccgGCCCUCUG-CGGUCGAGGCc--- -3'
miRNA:   3'- -UCG---CGGGGGACgGCCGGCUCCGcuau -5'
3825 5' -65.6 NC_001650.1 + 51103 0.67 0.428877
Target:  5'- --aGCCCCUggUGCUgGGCCGAGGCc--- -3'
miRNA:   3'- ucgCGGGGG--ACGG-CCGGCUCCGcuau -5'
3825 5' -65.6 NC_001650.1 + 25863 0.67 0.428877
Target:  5'- cGCGCugaCCCCgGCC-GCCGAGGgGGg- -3'
miRNA:   3'- uCGCG---GGGGaCGGcCGGCUCCgCUau -5'
3825 5' -65.6 NC_001650.1 + 179790 0.67 0.428877
Target:  5'- cGGCccgGCCCUCUG-CGGUCGAGGCc--- -3'
miRNA:   3'- -UCG---CGGGGGACgGCCGGCUCCGcuau -5'
3825 5' -65.6 NC_001650.1 + 83200 0.67 0.428877
Target:  5'- gAGCGCgCCCUGCUGuCCaagcugaacaggGGGGCGGUc -3'
miRNA:   3'- -UCGCGgGGGACGGCcGG------------CUCCGCUAu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.