miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3828 5' -55.4 NC_001650.1 + 26634 0.66 0.922819
Target:  5'- uUGCCCA---GGGGCgGcGCGGUGCUg -3'
miRNA:   3'- cACGGGUauuUCCCGaCaCGCUGCGG- -5'
3828 5' -55.4 NC_001650.1 + 47643 0.67 0.917209
Target:  5'- -gGCCU----GGGGCUgGUGCGGCGa- -3'
miRNA:   3'- caCGGGuauuUCCCGA-CACGCUGCgg -5'
3828 5' -55.4 NC_001650.1 + 61011 0.67 0.911362
Target:  5'- -gGCCCGUAGaAGGGCaGccacUGgGACuGCCu -3'
miRNA:   3'- caCGGGUAUU-UCCCGaC----ACgCUG-CGG- -5'
3828 5' -55.4 NC_001650.1 + 75490 0.67 0.911362
Target:  5'- -gGCUCGggGAAGaGGCUGUcuuUGACGCCc -3'
miRNA:   3'- caCGGGUa-UUUC-CCGACAc--GCUGCGG- -5'
3828 5' -55.4 NC_001650.1 + 138962 0.67 0.911362
Target:  5'- gGUGggaaCCGUAcGGGGaaccgcuaCUGUGgGGCGCCu -3'
miRNA:   3'- -CACg---GGUAUuUCCC--------GACACgCUGCGG- -5'
3828 5' -55.4 NC_001650.1 + 38307 0.67 0.905278
Target:  5'- cGUGgCCAaacggcggugUGGGGGGCUGgGCuGuACGCCc -3'
miRNA:   3'- -CACgGGU----------AUUUCCCGACaCG-C-UGCGG- -5'
3828 5' -55.4 NC_001650.1 + 26460 0.67 0.905278
Target:  5'- uUGCCCGUgGGAGGGCcG-GaCG-CGCCc -3'
miRNA:   3'- cACGGGUA-UUUCCCGaCaC-GCuGCGG- -5'
3828 5' -55.4 NC_001650.1 + 136623 0.67 0.905278
Target:  5'- -cGCCCG---GGGGCgucGgGGCGCCc -3'
miRNA:   3'- caCGGGUauuUCCCGacaCgCUGCGG- -5'
3828 5' -55.4 NC_001650.1 + 48069 0.67 0.898962
Target:  5'- -cGCCC-UGAAcguGGGCaUGUGCGugGaCa -3'
miRNA:   3'- caCGGGuAUUU---CCCG-ACACGCugCgG- -5'
3828 5' -55.4 NC_001650.1 + 89350 0.67 0.898962
Target:  5'- cGUGCuCCAUGuuGGGCgc-GCG-CGUCg -3'
miRNA:   3'- -CACG-GGUAUuuCCCGacaCGCuGCGG- -5'
3828 5' -55.4 NC_001650.1 + 30411 0.67 0.898962
Target:  5'- cUGCCCGcAGAGGGCgcccUGgaGGCGCUc -3'
miRNA:   3'- cACGGGUaUUUCCCGac--ACg-CUGCGG- -5'
3828 5' -55.4 NC_001650.1 + 66622 0.67 0.898317
Target:  5'- -cGUCCA---GGGGCUG-GCGGacguguuCGCCa -3'
miRNA:   3'- caCGGGUauuUCCCGACaCGCU-------GCGG- -5'
3828 5' -55.4 NC_001650.1 + 124457 0.68 0.887695
Target:  5'- cGUGUCCGUGGGGGGCgccucgcccccggggGCcacgggccccucGACGCCc -3'
miRNA:   3'- -CACGGGUAUUUCCCGaca------------CG------------CUGCGG- -5'
3828 5' -55.4 NC_001650.1 + 86377 0.68 0.885639
Target:  5'- gGUGgCCGUGAcccGGGCgaggGCGAUGCUu -3'
miRNA:   3'- -CACgGGUAUUu--CCCGaca-CGCUGCGG- -5'
3828 5' -55.4 NC_001650.1 + 165450 0.68 0.885639
Target:  5'- cUGCCCGgGGAGGGgaGgaagGCGAgCgGCCc -3'
miRNA:   3'- cACGGGUaUUUCCCgaCa---CGCU-G-CGG- -5'
3828 5' -55.4 NC_001650.1 + 107565 0.68 0.885639
Target:  5'- -gGCCCAUGuacauccuGGGGGCcGagaagGCGcGCGCCu -3'
miRNA:   3'- caCGGGUAU--------UUCCCGaCa----CGC-UGCGG- -5'
3828 5' -55.4 NC_001650.1 + 27366 0.68 0.880764
Target:  5'- aUGCCCccgagagGUGGuucgauuccaauggcGGGGCUGcUGCcaGACGCCc -3'
miRNA:   3'- cACGGG-------UAUU---------------UCCCGAC-ACG--CUGCGG- -5'
3828 5' -55.4 NC_001650.1 + 13831 0.68 0.878641
Target:  5'- uGUGCCCcuuAAGGGCcaaUGgcagagcGgGACGCCc -3'
miRNA:   3'- -CACGGGuauUUCCCG---ACa------CgCUGCGG- -5'
3828 5' -55.4 NC_001650.1 + 133347 0.68 0.878641
Target:  5'- -cGCUCGaagcGGGGC-GUGCGcuGCGCCa -3'
miRNA:   3'- caCGGGUauu-UCCCGaCACGC--UGCGG- -5'
3828 5' -55.4 NC_001650.1 + 133310 0.68 0.878641
Target:  5'- cUGCCCAgGAGgcgccGGGCgagGgGACGCCc -3'
miRNA:   3'- cACGGGUaUUU-----CCCGacaCgCUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.