miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
383 3' -57.7 AC_000011.1 + 10134 0.66 0.44449
Target:  5'- ---gAUGAggaagUgCGGCGGCGGcuGGCGGUAg -3'
miRNA:   3'- uaugUACU-----AgGUCGCCGCC--UCGCCGU- -5'
383 3' -57.7 AC_000011.1 + 23077 0.66 0.441474
Target:  5'- cAUGCuUGGUCUuGCgggguuucuucuugGGCGGcAGCGGCGg -3'
miRNA:   3'- -UAUGuACUAGGuCG--------------CCGCC-UCGCCGU- -5'
383 3' -57.7 AC_000011.1 + 34673 0.66 0.434482
Target:  5'- cUGCAcaccGAUcgCCGGCGGCGGucuCGGCGc -3'
miRNA:   3'- uAUGUa---CUA--GGUCGCCGCCuc-GCCGU- -5'
383 3' -57.7 AC_000011.1 + 25181 0.67 0.386485
Target:  5'- uUGCAgg--CCAGgGaGCGGuGCGGCGu -3'
miRNA:   3'- uAUGUacuaGGUCgC-CGCCuCGCCGU- -5'
383 3' -57.7 AC_000011.1 + 27220 0.67 0.367396
Target:  5'- -gGCGaGAUCCcgagcgaAGCaGCGGAaGCGGCGg -3'
miRNA:   3'- uaUGUaCUAGG-------UCGcCGCCU-CGCCGU- -5'
383 3' -57.7 AC_000011.1 + 11763 0.68 0.333698
Target:  5'- cGUGCgGUGAgcgCCAGCaGGCGGcGCGaGCu -3'
miRNA:   3'- -UAUG-UACUa--GGUCG-CCGCCuCGC-CGu -5'
383 3' -57.7 AC_000011.1 + 8156 0.68 0.333698
Target:  5'- -gGCA-GGUCCAGaccuCGGCGcGAGCGGg- -3'
miRNA:   3'- uaUGUaCUAGGUC----GCCGC-CUCGCCgu -5'
383 3' -57.7 AC_000011.1 + 14449 0.68 0.325431
Target:  5'- -gACA--AUUacuuGGCGGUGGGGCGGCAg -3'
miRNA:   3'- uaUGUacUAGg---UCGCCGCCUCGCCGU- -5'
383 3' -57.7 AC_000011.1 + 14194 0.68 0.325431
Target:  5'- -gACGaGcgCUcGCGGUGGGGCGGCc -3'
miRNA:   3'- uaUGUaCuaGGuCGCCGCCUCGCCGu -5'
383 3' -57.7 AC_000011.1 + 15927 0.68 0.325431
Target:  5'- -cGCGcGGcCaCGGCGGCGGcAGCGGCc -3'
miRNA:   3'- uaUGUaCUaG-GUCGCCGCC-UCGCCGu -5'
383 3' -57.7 AC_000011.1 + 25054 0.68 0.301548
Target:  5'- -aGCAgUGGcUCCacAGCGGCGGGG-GGCAc -3'
miRNA:   3'- uaUGU-ACU-AGG--UCGCCGCCUCgCCGU- -5'
383 3' -57.7 AC_000011.1 + 6405 0.68 0.293893
Target:  5'- -gGCAgggGGUCCAGCaugaccucgucGGgGGGGuCGGCAu -3'
miRNA:   3'- uaUGUa--CUAGGUCG-----------CCgCCUC-GCCGU- -5'
383 3' -57.7 AC_000011.1 + 20318 0.68 0.293893
Target:  5'- -cGCGUGAaggaCCAGCcGCGGAagGCGGCc -3'
miRNA:   3'- uaUGUACUa---GGUCGcCGCCU--CGCCGu -5'
383 3' -57.7 AC_000011.1 + 10249 0.7 0.250469
Target:  5'- -cAgGUGAUgCCGGCGGCGGugguggaGGCGcGCGg -3'
miRNA:   3'- uaUgUACUA-GGUCGCCGCC-------UCGC-CGU- -5'
383 3' -57.7 AC_000011.1 + 15769 0.7 0.244529
Target:  5'- -----aGAgCCGGCGGCGGcgcaucgcccGGCGGCAc -3'
miRNA:   3'- uauguaCUaGGUCGCCGCC----------UCGCCGU- -5'
383 3' -57.7 AC_000011.1 + 23513 0.7 0.244529
Target:  5'- -gGCggGGcUgGGCGGCGGGGCGGUu -3'
miRNA:   3'- uaUGuaCUaGgUCGCCGCCUCGCCGu -5'
383 3' -57.7 AC_000011.1 + 8444 0.71 0.193524
Target:  5'- --cCAUGGUUagaAGCGGCGGcgaggacgcgcgccgGGCGGCAg -3'
miRNA:   3'- uauGUACUAGg--UCGCCGCC---------------UCGCCGU- -5'
383 3' -57.7 AC_000011.1 + 26725 0.71 0.18616
Target:  5'- -cAgGUG-UCCAGCuGGCGG-GCGGCGc -3'
miRNA:   3'- uaUgUACuAGGUCG-CCGCCuCGCCGU- -5'
383 3' -57.7 AC_000011.1 + 13916 0.74 0.128486
Target:  5'- -aGCGUGAUgCAGCaggcgauGGCGGcGGCGGCGa -3'
miRNA:   3'- uaUGUACUAgGUCG-------CCGCC-UCGCCGU- -5'
383 3' -57.7 AC_000011.1 + 17077 0.77 0.0739
Target:  5'- -gGgGUGGUUgCAGCGGCGGuGCGGCGa -3'
miRNA:   3'- uaUgUACUAG-GUCGCCGCCuCGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.