miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3834 5' -52.6 NC_001650.1 + 130068 0.66 0.990283
Target:  5'- gCAggGGGUGGaGaGGGCcgGGgagGGggGa -3'
miRNA:   3'- gGUaaCCCACC-C-CCUGaaUCa--CCuuC- -5'
3834 5' -52.6 NC_001650.1 + 108479 0.66 0.988957
Target:  5'- aCCAcgUGcGcGUGGGgucccucuaccuGGACggGGUGGAGGg -3'
miRNA:   3'- -GGUa-AC-C-CACCC------------CCUGaaUCACCUUC- -5'
3834 5' -52.6 NC_001650.1 + 77448 0.66 0.984125
Target:  5'- ----aGGGgagGGGGGAau--GUGGggGu -3'
miRNA:   3'- gguaaCCCa--CCCCCUgaauCACCuuC- -5'
3834 5' -52.6 NC_001650.1 + 24341 0.67 0.982201
Target:  5'- gCAggagGaGGUGGGGGAggc-GUGGAGGu -3'
miRNA:   3'- gGUaa--C-CCACCCCCUgaauCACCUUC- -5'
3834 5' -52.6 NC_001650.1 + 111291 0.67 0.977835
Target:  5'- gCCAUgauGGUGGGGGGCac-GUuGAAGg -3'
miRNA:   3'- -GGUAac-CCACCCCCUGaauCAcCUUC- -5'
3834 5' -52.6 NC_001650.1 + 167687 0.67 0.975377
Target:  5'- gCCAUcuuGGUGGGGuGGCcaucUUGGUGGGGu -3'
miRNA:   3'- -GGUAac-CCACCCC-CUG----AAUCACCUUc -5'
3834 5' -52.6 NC_001650.1 + 182773 0.67 0.975377
Target:  5'- gCCAaUGGGagccGGGGGGCcggccuugUGGUGuGAGGu -3'
miRNA:   3'- -GGUaACCCa---CCCCCUGa-------AUCAC-CUUC- -5'
3834 5' -52.6 NC_001650.1 + 16066 0.67 0.975377
Target:  5'- gCCAaUGGGagccGGGGGGCcggccuugUGGUGuGAGGu -3'
miRNA:   3'- -GGUaACCCa---CCCCCUGa-------AUCAC-CUUC- -5'
3834 5' -52.6 NC_001650.1 + 86670 0.67 0.972726
Target:  5'- ---cUGGaUGGGcucguaggaGGGCUUGGUGGggGa -3'
miRNA:   3'- gguaACCcACCC---------CCUGAAUCACCuuC- -5'
3834 5' -52.6 NC_001650.1 + 18127 0.68 0.969875
Target:  5'- cCCucgGcGGUGGGGGuggu-GUGGggGg -3'
miRNA:   3'- -GGuaaC-CCACCCCCugaauCACCuuC- -5'
3834 5' -52.6 NC_001650.1 + 134546 0.68 0.966817
Target:  5'- aCCAccUGGGUGGGGG-CgUAGaGGGGc -3'
miRNA:   3'- -GGUa-ACCCACCCCCuGaAUCaCCUUc -5'
3834 5' -52.6 NC_001650.1 + 981 0.68 0.963545
Target:  5'- gCCAUcuuGGUGGGGuGGCaucUUGGUGGGGu -3'
miRNA:   3'- -GGUAac-CCACCCC-CUG---AAUCACCUUc -5'
3834 5' -52.6 NC_001650.1 + 17970 0.68 0.959694
Target:  5'- ----aGGGUGGGGGugUacucuaaaacccaUGGUGGu-- -3'
miRNA:   3'- gguaaCCCACCCCCugA-------------AUCACCuuc -5'
3834 5' -52.6 NC_001650.1 + 9132 0.68 0.956342
Target:  5'- aCCuggGGGUGGGGGGagaaUAGaaGGggGa -3'
miRNA:   3'- -GGuaaCCCACCCCCUga--AUCa-CCuuC- -5'
3834 5' -52.6 NC_001650.1 + 395 0.68 0.956342
Target:  5'- gCCAUguugcUGGGaagccaucuUGGGGGucagccauCUUGGUGGGAa -3'
miRNA:   3'- -GGUA-----ACCC---------ACCCCCu-------GAAUCACCUUc -5'
3834 5' -52.6 NC_001650.1 + 175839 0.68 0.956342
Target:  5'- aCCuggGGGUGGGGGGagaaUAGaaGGggGa -3'
miRNA:   3'- -GGuaaCCCACCCCCUga--AUCa-CCuuC- -5'
3834 5' -52.6 NC_001650.1 + 167102 0.68 0.956342
Target:  5'- gCCAUguugcUGGGaagccaucuUGGGGGucagccauCUUGGUGGGAa -3'
miRNA:   3'- -GGUA-----ACCC---------ACCCCCu-------GAAUCACCUUc -5'
3834 5' -52.6 NC_001650.1 + 147746 0.69 0.951993
Target:  5'- ---gUGGGgggugccugguuuUGGGGGACcc-GUGGAGGg -3'
miRNA:   3'- gguaACCC-------------ACCCCCUGaauCACCUUC- -5'
3834 5' -52.6 NC_001650.1 + 9180 0.69 0.943816
Target:  5'- cCCGggguggUGGGggcuaUGGGGGugUgugGGUGGuGGg -3'
miRNA:   3'- -GGUa-----ACCC-----ACCCCCugAa--UCACCuUC- -5'
3834 5' -52.6 NC_001650.1 + 9020 0.69 0.943816
Target:  5'- aCCAaUGGGUGuagaGGGuGACUgaugGGUGGGu- -3'
miRNA:   3'- -GGUaACCCAC----CCC-CUGAa---UCACCUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.