Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
384 | 3' | -58.6 | AC_000011.1 | + | 25014 | 0.66 | 0.361466 |
Target: 5'- cAGCGGCACgaaguccgagggcaGCGCGgaGCAGGUGGc- -3' miRNA: 3'- -UCGCCGUGgg------------CGCGCa-CGUCUACUuu -5' |
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384 | 3' | -58.6 | AC_000011.1 | + | 8524 | 0.67 | 0.334917 |
Target: 5'- cGuCGGCGCCgCGCGCGgGUAGGUu--- -3' miRNA: 3'- uC-GCCGUGG-GCGCGCaCGUCUAcuuu -5' |
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384 | 3' | -58.6 | AC_000011.1 | + | 20296 | 0.67 | 0.302809 |
Target: 5'- aGGCGGC-CCaguuGCGCGaGgGGAUGGAGa -3' miRNA: 3'- -UCGCCGuGGg---CGCGCaCgUCUACUUU- -5' |
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384 | 3' | -58.6 | AC_000011.1 | + | 8126 | 0.69 | 0.252425 |
Target: 5'- uGGUGGUcaugcugacgaGCCCGCGCGggagGCAGGUc--- -3' miRNA: 3'- -UCGCCG-----------UGGGCGCGCa---CGUCUAcuuu -5' |
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384 | 3' | -58.6 | AC_000011.1 | + | 11608 | 0.7 | 0.21317 |
Target: 5'- cAGCGGCAgCCCGCGCuccugcaccacgauGcucUGCAGAUGu-- -3' miRNA: 3'- -UCGCCGU-GGGCGCG--------------C---ACGUCUACuuu -5' |
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384 | 3' | -58.6 | AC_000011.1 | + | 16718 | 0.73 | 0.129953 |
Target: 5'- aGGUGGCcccggGCCUGgGCGUGCAGAccgUGGAc -3' miRNA: 3'- -UCGCCG-----UGGGCgCGCACGUCU---ACUUu -5' |
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384 | 3' | -58.6 | AC_000011.1 | + | 16986 | 0.73 | 0.126282 |
Target: 5'- cGCGGUAgCCCG-GCGUGgGGAUGAu- -3' miRNA: 3'- uCGCCGU-GGGCgCGCACgUCUACUuu -5' |
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384 | 3' | -58.6 | AC_000011.1 | + | 11019 | 1.06 | 0.000349 |
Target: 5'- gAGCGGCACCCGCGCGUGCAGAUGAAAa -3' miRNA: 3'- -UCGCCGUGGGCGCGCACGUCUACUUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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