miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
384 5' -55.2 AC_000011.1 + 4404 0.66 0.592204
Target:  5'- uGGuCCUGCacaacaugaacCCCAGGCGGGAUCUGg -3'
miRNA:   3'- -CC-GGAUGcac--------GGGUUCGUCUUGGACa -5'
384 5' -55.2 AC_000011.1 + 13621 0.66 0.585389
Target:  5'- gGGCC-ACGaGCCgGGGCAGcGCCg-- -3'
miRNA:   3'- -CCGGaUGCaCGGgUUCGUCuUGGaca -5'
384 5' -55.2 AC_000011.1 + 4123 0.69 0.404889
Target:  5'- gGGCCU-CGUGCUCGGgGguGGugUUGUa -3'
miRNA:   3'- -CCGGAuGCACGGGUU-CguCUugGACA- -5'
384 5' -55.2 AC_000011.1 + 25355 0.69 0.385977
Target:  5'- cGGCCUGCGUcaucaCCCAGGgGGcgauCCUGg -3'
miRNA:   3'- -CCGGAUGCAc----GGGUUCgUCuu--GGACa -5'
384 5' -55.2 AC_000011.1 + 16782 0.7 0.367656
Target:  5'- cGGUCUGCacGCCCAGGCccGGGGCCa-- -3'
miRNA:   3'- -CCGGAUGcaCGGGUUCG--UCUUGGaca -5'
384 5' -55.2 AC_000011.1 + 24707 0.7 0.341316
Target:  5'- uGGCagcaGUGUCUggagGAGCAGAACCUGa -3'
miRNA:   3'- -CCGgaugCACGGG----UUCGUCUUGGACa -5'
384 5' -55.2 AC_000011.1 + 17549 0.71 0.324528
Target:  5'- cGGCC-GCGUGCCguGucGCGGAGCCa-- -3'
miRNA:   3'- -CCGGaUGCACGGguU--CGUCUUGGaca -5'
384 5' -55.2 AC_000011.1 + 20574 0.71 0.292819
Target:  5'- gGGCuuCUACGUGCCCGAGggcuacaAGGACCg-- -3'
miRNA:   3'- -CCG--GAUGCACGGGUUCg------UCUUGGaca -5'
384 5' -55.2 AC_000011.1 + 25384 0.72 0.260792
Target:  5'- cGGCCUugGgcggaugggauugGUCCucGUAGAACCUGa -3'
miRNA:   3'- -CCGGAugCa------------CGGGuuCGUCUUGGACa -5'
384 5' -55.2 AC_000011.1 + 22237 0.73 0.230422
Target:  5'- aGCCcgggUGCGUGCCCAccaugggaaGGCAG-ACCUGc -3'
miRNA:   3'- cCGG----AUGCACGGGU---------UCGUCuUGGACa -5'
384 5' -55.2 AC_000011.1 + 13965 0.76 0.147237
Target:  5'- aGGCucCUACGUGCCCccGCGGuACCUGg -3'
miRNA:   3'- -CCG--GAUGCACGGGuuCGUCuUGGACa -5'
384 5' -55.2 AC_000011.1 + 11059 1.09 0.000522
Target:  5'- aGGCCUACGUGCCCAAGCAGAACCUGUu -3'
miRNA:   3'- -CCGGAUGCACGGGUUCGUCUUGGACA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.