miRNA display CGI


Results 1 - 20 of 76 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3844 3' -56.2 NC_001650.1 + 107166 0.66 0.925518
Target:  5'- uGugCCGCGUGGAcacgggcuccCCCgagGCCCAg--- -3'
miRNA:   3'- -CugGGUGUACCU----------GGGaa-CGGGUguac -5'
3844 3' -56.2 NC_001650.1 + 74725 0.66 0.925518
Target:  5'- uGCaCCACAUGGGCagg-GCCUACAc- -3'
miRNA:   3'- cUG-GGUGUACCUGggaaCGGGUGUac -5'
3844 3' -56.2 NC_001650.1 + 103730 0.66 0.925518
Target:  5'- uGCCCACGgaGGugaacuCCC-UGCCCGCGa- -3'
miRNA:   3'- cUGGGUGUa-CCu-----GGGaACGGGUGUac -5'
3844 3' -56.2 NC_001650.1 + 134236 0.66 0.925518
Target:  5'- gGGCUCGCA-GGugCCggUGuCCCAgGUGa -3'
miRNA:   3'- -CUGGGUGUaCCugGGa-AC-GGGUgUAC- -5'
3844 3' -56.2 NC_001650.1 + 65745 0.66 0.925518
Target:  5'- uGACCUACGUGGugUCcaccgcGCCCAUc-- -3'
miRNA:   3'- -CUGGGUGUACCugGGaa----CGGGUGuac -5'
3844 3' -56.2 NC_001650.1 + 2340 0.66 0.920038
Target:  5'- --gCCACAUGGggauACCC--GCCCACuAUGg -3'
miRNA:   3'- cugGGUGUACC----UGGGaaCGGGUG-UAC- -5'
3844 3' -56.2 NC_001650.1 + 169047 0.66 0.920038
Target:  5'- --gCCACAUGGggauACCC--GCCCACuAUGg -3'
miRNA:   3'- cugGGUGUACC----UGGGaaCGGGUG-UAC- -5'
3844 3' -56.2 NC_001650.1 + 146464 0.66 0.914322
Target:  5'- aGACCCGCGgcccuagGcGGCCCggGCgCCGCGa- -3'
miRNA:   3'- -CUGGGUGUa------C-CUGGGaaCG-GGUGUac -5'
3844 3' -56.2 NC_001650.1 + 47567 0.66 0.914322
Target:  5'- cGGCUCGCcUGGcACUC-UGCCCGCGg- -3'
miRNA:   3'- -CUGGGUGuACC-UGGGaACGGGUGUac -5'
3844 3' -56.2 NC_001650.1 + 84789 0.66 0.90837
Target:  5'- gGGCCCACGcgGuGGCCaagcUGCCCGCcAUGc -3'
miRNA:   3'- -CUGGGUGUa-C-CUGGga--ACGGGUG-UAC- -5'
3844 3' -56.2 NC_001650.1 + 90079 0.66 0.90837
Target:  5'- uGACCUugGUGGACuCCUcGCCUGucucUAUGu -3'
miRNA:   3'- -CUGGGugUACCUG-GGAaCGGGU----GUAC- -5'
3844 3' -56.2 NC_001650.1 + 95344 0.66 0.902184
Target:  5'- -uUCCAgGcGGACUCgggguugGCCCACAUGa -3'
miRNA:   3'- cuGGGUgUaCCUGGGaa-----CGGGUGUAC- -5'
3844 3' -56.2 NC_001650.1 + 131931 0.66 0.902184
Target:  5'- -uCCUGCuGUGGGCCCU-GCUCACGg- -3'
miRNA:   3'- cuGGGUG-UACCUGGGAaCGGGUGUac -5'
3844 3' -56.2 NC_001650.1 + 117643 0.66 0.902184
Target:  5'- cGGCCUGCAU-GACCCUgacCCCggGCGUGg -3'
miRNA:   3'- -CUGGGUGUAcCUGGGAac-GGG--UGUAC- -5'
3844 3' -56.2 NC_001650.1 + 58096 0.66 0.895767
Target:  5'- cGCCCGCcgGGGCCUggG-CCGCGa- -3'
miRNA:   3'- cUGGGUGuaCCUGGGaaCgGGUGUac -5'
3844 3' -56.2 NC_001650.1 + 159259 0.67 0.889121
Target:  5'- -cCCCAgGUGGguGCCCUggGCCCAgCAg- -3'
miRNA:   3'- cuGGGUgUACC--UGGGAa-CGGGU-GUac -5'
3844 3' -56.2 NC_001650.1 + 2404 0.67 0.882252
Target:  5'- cGGCCCAgcUGGcACCC-UGCCCGgGUc -3'
miRNA:   3'- -CUGGGUguACC-UGGGaACGGGUgUAc -5'
3844 3' -56.2 NC_001650.1 + 169111 0.67 0.882252
Target:  5'- cGGCCCAgcUGGcACCC-UGCCCGgGUc -3'
miRNA:   3'- -CUGGGUguACC-UGGGaACGGGUgUAc -5'
3844 3' -56.2 NC_001650.1 + 24592 0.67 0.881552
Target:  5'- cAUCCAagggaauCAUGGGuccCCCUUGCCCACc-- -3'
miRNA:   3'- cUGGGU-------GUACCU---GGGAACGGGUGuac -5'
3844 3' -56.2 NC_001650.1 + 93127 0.67 0.881552
Target:  5'- aGGCCCAgCAUGGACCCccuuaaGCUCuuuacggGCGUGc -3'
miRNA:   3'- -CUGGGU-GUACCUGGGaa----CGGG-------UGUAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.