miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3844 3' -56.2 NC_001650.1 + 22021 0.71 0.65696
Target:  5'- cGCCCGCGUGcccgucccGGCCCUgGCCCACc-- -3'
miRNA:   3'- cUGGGUGUAC--------CUGGGAaCGGGUGuac -5'
3844 3' -56.2 NC_001650.1 + 11210 0.71 0.687349
Target:  5'- uGGCCCAauagGGACCCagggggagUUGCCCACu-- -3'
miRNA:   3'- -CUGGGUgua-CCUGGG--------AACGGGUGuac -5'
3844 3' -56.2 NC_001650.1 + 177917 0.71 0.687349
Target:  5'- uGGCCCAauagGGACCCagggggagUUGCCCACu-- -3'
miRNA:   3'- -CUGGGUgua-CCUGGG--------AACGGGUGuac -5'
3844 3' -56.2 NC_001650.1 + 135538 0.7 0.717328
Target:  5'- aGCCCAaggaAUGGugCCUuuuaagguuUGCCCGCGa- -3'
miRNA:   3'- cUGGGUg---UACCugGGA---------ACGGGUGUac -5'
3844 3' -56.2 NC_001650.1 + 148914 0.7 0.727188
Target:  5'- gGGCCacagGCGUGuGGCCCUgGCCCGCGc- -3'
miRNA:   3'- -CUGGg---UGUAC-CUGGGAaCGGGUGUac -5'
3844 3' -56.2 NC_001650.1 + 138711 0.69 0.765725
Target:  5'- uGGCCCcugucuccaGCAUGGcCCCUgucUGCCaGCAUGg -3'
miRNA:   3'- -CUGGG---------UGUACCuGGGA---ACGGgUGUAC- -5'
3844 3' -56.2 NC_001650.1 + 138748 0.69 0.775087
Target:  5'- nGGCCCcugucugccaGCAUGGcCCCUgucUGCCaGCAUGg -3'
miRNA:   3'- -CUGGG----------UGUACCuGGGA---ACGGgUGUAC- -5'
3844 3' -56.2 NC_001650.1 + 166367 0.69 0.784323
Target:  5'- uACCCAUaAUGcauuuuGACCCUUGCCCAaCAUc -3'
miRNA:   3'- cUGGGUG-UAC------CUGGGAACGGGU-GUAc -5'
3844 3' -56.2 NC_001650.1 + 27755 0.69 0.791614
Target:  5'- cACCUACGUGGGCaCCgcggccaacacGCCCAUGUGc -3'
miRNA:   3'- cUGGGUGUACCUG-GGaa---------CGGGUGUAC- -5'
3844 3' -56.2 NC_001650.1 + 81184 0.69 0.793423
Target:  5'- -cUUCugGUGGGCCaCguaGCCCACGUGg -3'
miRNA:   3'- cuGGGugUACCUGG-Gaa-CGGGUGUAC- -5'
3844 3' -56.2 NC_001650.1 + 22494 0.69 0.793423
Target:  5'- cGCCCgGCAUGGGCCCcgccucgagGCcCCACAg- -3'
miRNA:   3'- cUGGG-UGUACCUGGGaa-------CG-GGUGUac -5'
3844 3' -56.2 NC_001650.1 + 103030 0.69 0.793423
Target:  5'- cAUCCACGUGGGCUacgugGCCCACc-- -3'
miRNA:   3'- cUGGGUGUACCUGGgaa--CGGGUGuac -5'
3844 3' -56.2 NC_001650.1 + 129797 0.69 0.802378
Target:  5'- cGCCCGCcuucgacUGGcucacACCCUacaggGCCCACAUGa -3'
miRNA:   3'- cUGGGUGu------ACC-----UGGGAa----CGGGUGUAC- -5'
3844 3' -56.2 NC_001650.1 + 52299 0.69 0.802378
Target:  5'- gGGCCCACAgcaGGaagcccGCCCUgGCCCGCc-- -3'
miRNA:   3'- -CUGGGUGUa--CC------UGGGAaCGGGUGuac -5'
3844 3' -56.2 NC_001650.1 + 35768 0.68 0.819822
Target:  5'- aACCC-CA--GACCacaUUGCCCACGUGg -3'
miRNA:   3'- cUGGGuGUacCUGGg--AACGGGUGUAC- -5'
3844 3' -56.2 NC_001650.1 + 107215 0.68 0.819822
Target:  5'- cACCCuguuccuguACGUGGACCCc-GCCUACAc- -3'
miRNA:   3'- cUGGG---------UGUACCUGGGaaCGGGUGUac -5'
3844 3' -56.2 NC_001650.1 + 5970 0.68 0.823231
Target:  5'- -uCCCAU-UGGGCCUUUgggaaauuacccaagGCCCACAUGc -3'
miRNA:   3'- cuGGGUGuACCUGGGAA---------------CGGGUGUAC- -5'
3844 3' -56.2 NC_001650.1 + 175078 0.68 0.828294
Target:  5'- -cCCCACAcucaGGACCCcUGCCCcuCAUa -3'
miRNA:   3'- cuGGGUGUa---CCUGGGaACGGGu-GUAc -5'
3844 3' -56.2 NC_001650.1 + 131218 0.68 0.828294
Target:  5'- aGGCCCucCGUGGACCCgguccccgaGaCCCugGUGc -3'
miRNA:   3'- -CUGGGu-GUACCUGGGaa-------C-GGGugUAC- -5'
3844 3' -56.2 NC_001650.1 + 8371 0.68 0.828294
Target:  5'- -cCCCACAcucaGGACCCcUGCCCcuCAUa -3'
miRNA:   3'- cuGGGUGUa---CCUGGGaACGGGu-GUAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.