Results 41 - 60 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3844 | 3' | -56.2 | NC_001650.1 | + | 35768 | 0.68 | 0.819822 |
Target: 5'- aACCC-CA--GACCacaUUGCCCACGUGg -3' miRNA: 3'- cUGGGuGUacCUGGg--AACGGGUGUAC- -5' |
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3844 | 3' | -56.2 | NC_001650.1 | + | 107215 | 0.68 | 0.819822 |
Target: 5'- cACCCuguuccuguACGUGGACCCc-GCCUACAc- -3' miRNA: 3'- cUGGG---------UGUACCUGGGaaCGGGUGUac -5' |
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3844 | 3' | -56.2 | NC_001650.1 | + | 52299 | 0.69 | 0.802378 |
Target: 5'- gGGCCCACAgcaGGaagcccGCCCUgGCCCGCc-- -3' miRNA: 3'- -CUGGGUGUa--CC------UGGGAaCGGGUGuac -5' |
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3844 | 3' | -56.2 | NC_001650.1 | + | 129797 | 0.69 | 0.802378 |
Target: 5'- cGCCCGCcuucgacUGGcucacACCCUacaggGCCCACAUGa -3' miRNA: 3'- cUGGGUGu------ACC-----UGGGAa----CGGGUGUAC- -5' |
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3844 | 3' | -56.2 | NC_001650.1 | + | 22494 | 0.69 | 0.793423 |
Target: 5'- cGCCCgGCAUGGGCCCcgccucgagGCcCCACAg- -3' miRNA: 3'- cUGGG-UGUACCUGGGaa-------CG-GGUGUac -5' |
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3844 | 3' | -56.2 | NC_001650.1 | + | 103030 | 0.69 | 0.793423 |
Target: 5'- cAUCCACGUGGGCUacgugGCCCACc-- -3' miRNA: 3'- cUGGGUGUACCUGGgaa--CGGGUGuac -5' |
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3844 | 3' | -56.2 | NC_001650.1 | + | 81184 | 0.69 | 0.793423 |
Target: 5'- -cUUCugGUGGGCCaCguaGCCCACGUGg -3' miRNA: 3'- cuGGGugUACCUGG-Gaa-CGGGUGUAC- -5' |
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3844 | 3' | -56.2 | NC_001650.1 | + | 27755 | 0.69 | 0.791614 |
Target: 5'- cACCUACGUGGGCaCCgcggccaacacGCCCAUGUGc -3' miRNA: 3'- cUGGGUGUACCUG-GGaa---------CGGGUGUAC- -5' |
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3844 | 3' | -56.2 | NC_001650.1 | + | 166367 | 0.69 | 0.784323 |
Target: 5'- uACCCAUaAUGcauuuuGACCCUUGCCCAaCAUc -3' miRNA: 3'- cUGGGUG-UAC------CUGGGAACGGGU-GUAc -5' |
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3844 | 3' | -56.2 | NC_001650.1 | + | 138748 | 0.69 | 0.775087 |
Target: 5'- nGGCCCcugucugccaGCAUGGcCCCUgucUGCCaGCAUGg -3' miRNA: 3'- -CUGGG----------UGUACCuGGGA---ACGGgUGUAC- -5' |
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3844 | 3' | -56.2 | NC_001650.1 | + | 138711 | 0.69 | 0.765725 |
Target: 5'- uGGCCCcugucuccaGCAUGGcCCCUgucUGCCaGCAUGg -3' miRNA: 3'- -CUGGG---------UGUACCuGGGA---ACGGgUGUAC- -5' |
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3844 | 3' | -56.2 | NC_001650.1 | + | 148914 | 0.7 | 0.727188 |
Target: 5'- gGGCCacagGCGUGuGGCCCUgGCCCGCGc- -3' miRNA: 3'- -CUGGg---UGUAC-CUGGGAaCGGGUGUac -5' |
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3844 | 3' | -56.2 | NC_001650.1 | + | 135538 | 0.7 | 0.717328 |
Target: 5'- aGCCCAaggaAUGGugCCUuuuaagguuUGCCCGCGa- -3' miRNA: 3'- cUGGGUg---UACCugGGA---------ACGGGUGUac -5' |
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3844 | 3' | -56.2 | NC_001650.1 | + | 11210 | 0.71 | 0.687349 |
Target: 5'- uGGCCCAauagGGACCCagggggagUUGCCCACu-- -3' miRNA: 3'- -CUGGGUgua-CCUGGG--------AACGGGUGuac -5' |
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3844 | 3' | -56.2 | NC_001650.1 | + | 177917 | 0.71 | 0.687349 |
Target: 5'- uGGCCCAauagGGACCCagggggagUUGCCCACu-- -3' miRNA: 3'- -CUGGGUgua-CCUGGG--------AACGGGUGuac -5' |
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3844 | 3' | -56.2 | NC_001650.1 | + | 22021 | 0.71 | 0.65696 |
Target: 5'- cGCCCGCGUGcccgucccGGCCCUgGCCCACc-- -3' miRNA: 3'- cUGGGUGUAC--------CUGGGAaCGGGUGuac -5' |
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3844 | 3' | -56.2 | NC_001650.1 | + | 178477 | 0.72 | 0.626393 |
Target: 5'- gGACCCcCAUGcacucaGACCCccgUGCCCACAa- -3' miRNA: 3'- -CUGGGuGUAC------CUGGGa--ACGGGUGUac -5' |
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3844 | 3' | -56.2 | NC_001650.1 | + | 11770 | 0.72 | 0.626393 |
Target: 5'- gGACCCcCAUGcacucaGACCCccgUGCCCACAa- -3' miRNA: 3'- -CUGGGuGUAC------CUGGGa--ACGGGUGUac -5' |
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3844 | 3' | -56.2 | NC_001650.1 | + | 157767 | 0.75 | 0.450002 |
Target: 5'- gGGCCCACGcUGG-CCUgggUGCCCACGUu -3' miRNA: 3'- -CUGGGUGU-ACCuGGGa--ACGGGUGUAc -5' |
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3844 | 3' | -56.2 | NC_001650.1 | + | 95874 | 0.77 | 0.372408 |
Target: 5'- aGGCCCGuCA-GGACCC-UGCCCGCGUc -3' miRNA: 3'- -CUGGGU-GUaCCUGGGaACGGGUGUAc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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