miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3844 3' -56.2 NC_001650.1 + 35768 0.68 0.819822
Target:  5'- aACCC-CA--GACCacaUUGCCCACGUGg -3'
miRNA:   3'- cUGGGuGUacCUGGg--AACGGGUGUAC- -5'
3844 3' -56.2 NC_001650.1 + 47567 0.66 0.914322
Target:  5'- cGGCUCGCcUGGcACUC-UGCCCGCGg- -3'
miRNA:   3'- -CUGGGUGuACC-UGGGaACGGGUGUac -5'
3844 3' -56.2 NC_001650.1 + 52299 0.69 0.802378
Target:  5'- gGGCCCACAgcaGGaagcccGCCCUgGCCCGCc-- -3'
miRNA:   3'- -CUGGGUGUa--CC------UGGGAaCGGGUGuac -5'
3844 3' -56.2 NC_001650.1 + 58096 0.66 0.895767
Target:  5'- cGCCCGCcgGGGCCUggG-CCGCGa- -3'
miRNA:   3'- cUGGGUGuaCCUGGGaaCgGGUGUac -5'
3844 3' -56.2 NC_001650.1 + 65745 0.66 0.925518
Target:  5'- uGACCUACGUGGugUCcaccgcGCCCAUc-- -3'
miRNA:   3'- -CUGGGUGUACCugGGaa----CGGGUGuac -5'
3844 3' -56.2 NC_001650.1 + 72570 0.67 0.860339
Target:  5'- gGACCCugAgGGACCUgcugcagGCCUcggACGUGg -3'
miRNA:   3'- -CUGGGugUaCCUGGGaa-----CGGG---UGUAC- -5'
3844 3' -56.2 NC_001650.1 + 74725 0.66 0.925518
Target:  5'- uGCaCCACAUGGGCagg-GCCUACAc- -3'
miRNA:   3'- cUG-GGUGUACCUGggaaCGGGUGUac -5'
3844 3' -56.2 NC_001650.1 + 78638 0.67 0.852618
Target:  5'- aGCCCACGUGGugCU--GCCCgagGCGUu -3'
miRNA:   3'- cUGGGUGUACCugGGaaCGGG---UGUAc -5'
3844 3' -56.2 NC_001650.1 + 79456 0.68 0.836589
Target:  5'- cGCCaacugcgggGCGUGGACCCUcuggcUGCCCugAUu -3'
miRNA:   3'- cUGGg--------UGUACCUGGGA-----ACGGGugUAc -5'
3844 3' -56.2 NC_001650.1 + 81184 0.69 0.793423
Target:  5'- -cUUCugGUGGGCCaCguaGCCCACGUGg -3'
miRNA:   3'- cuGGGugUACCUGG-Gaa-CGGGUGUAC- -5'
3844 3' -56.2 NC_001650.1 + 83457 0.67 0.860339
Target:  5'- uGGCCCAgAgGGACCaccugcgcgUGuCCCACGUGu -3'
miRNA:   3'- -CUGGGUgUaCCUGGga-------AC-GGGUGUAC- -5'
3844 3' -56.2 NC_001650.1 + 84789 0.66 0.90837
Target:  5'- gGGCCCACGcgGuGGCCaagcUGCCCGCcAUGc -3'
miRNA:   3'- -CUGGGUGUa-C-CUGGga--ACGGGUG-UAC- -5'
3844 3' -56.2 NC_001650.1 + 90079 0.66 0.90837
Target:  5'- uGACCUugGUGGACuCCUcGCCUGucucUAUGu -3'
miRNA:   3'- -CUGGGugUACCUG-GGAaCGGGU----GUAC- -5'
3844 3' -56.2 NC_001650.1 + 93127 0.67 0.881552
Target:  5'- aGGCCCAgCAUGGACCCccuuaaGCUCuuuacggGCGUGc -3'
miRNA:   3'- -CUGGGU-GUACCUGGGaa----CGGG-------UGUAC- -5'
3844 3' -56.2 NC_001650.1 + 95344 0.66 0.902184
Target:  5'- -uUCCAgGcGGACUCgggguugGCCCACAUGa -3'
miRNA:   3'- cuGGGUgUaCCUGGGaa-----CGGGUGUAC- -5'
3844 3' -56.2 NC_001650.1 + 95874 0.77 0.372408
Target:  5'- aGGCCCGuCA-GGACCC-UGCCCGCGUc -3'
miRNA:   3'- -CUGGGU-GUaCCUGGGaACGGGUGUAc -5'
3844 3' -56.2 NC_001650.1 + 100151 0.67 0.867855
Target:  5'- gGACaCCAUAaagGGGCCCcgGUCCACAa- -3'
miRNA:   3'- -CUG-GGUGUa--CCUGGGaaCGGGUGUac -5'
3844 3' -56.2 NC_001650.1 + 102629 0.68 0.828294
Target:  5'- cGACCuCGCGUcGGGcgacCCCgagGCCCugGUGg -3'
miRNA:   3'- -CUGG-GUGUA-CCU----GGGaa-CGGGugUAC- -5'
3844 3' -56.2 NC_001650.1 + 103030 0.69 0.793423
Target:  5'- cAUCCACGUGGGCUacgugGCCCACc-- -3'
miRNA:   3'- cUGGGUGUACCUGGgaa--CGGGUGuac -5'
3844 3' -56.2 NC_001650.1 + 103730 0.66 0.925518
Target:  5'- uGCCCACGgaGGugaacuCCC-UGCCCGCGa- -3'
miRNA:   3'- cUGGGUGUa-CCu-----GGGaACGGGUGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.