miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3844 3' -56.2 NC_001650.1 + 181162 0.78 0.311489
Target:  5'- cACCCcccuUGGACCCcUGCCCACGUGu -3'
miRNA:   3'- cUGGGugu-ACCUGGGaACGGGUGUAC- -5'
3844 3' -56.2 NC_001650.1 + 181105 0.87 0.082324
Target:  5'- --aCCACAUGGACCCUUGCCCACc-- -3'
miRNA:   3'- cugGGUGUACCUGGGAACGGGUGuac -5'
3844 3' -56.2 NC_001650.1 + 181038 0.94 0.028729
Target:  5'- -cCCCACAUGGACCCUUGCCCACuUGg -3'
miRNA:   3'- cuGGGUGUACCUGGGAACGGGUGuAC- -5'
3844 3' -56.2 NC_001650.1 + 181009 0.98 0.016156
Target:  5'- uGCCCACAUGGACCCcUGCCCACAUGg -3'
miRNA:   3'- cUGGGUGUACCUGGGaACGGGUGUAC- -5'
3844 3' -56.2 NC_001650.1 + 180977 0.98 0.016156
Target:  5'- uGCCCACAUGGACCCcUGCCCACAUGg -3'
miRNA:   3'- cUGGGUGUACCUGGGaACGGGUGUAC- -5'
3844 3' -56.2 NC_001650.1 + 180945 0.98 0.016156
Target:  5'- uGCCCACAUGGACCCcUGCCCACAUGg -3'
miRNA:   3'- cUGGGUGUACCUGGGaACGGGUGUAC- -5'
3844 3' -56.2 NC_001650.1 + 180913 1.05 0.005215
Target:  5'- uGCCCACAUGGACCCUUGCCCACAUGg -3'
miRNA:   3'- cUGGGUGUACCUGGGAACGGGUGUAC- -5'
3844 3' -56.2 NC_001650.1 + 180880 1.09 0.00317
Target:  5'- gGACCCACAUGGACCCUUGCCCACAUGg -3'
miRNA:   3'- -CUGGGUGUACCUGGGAACGGGUGUAC- -5'
3844 3' -56.2 NC_001650.1 + 178477 0.72 0.626393
Target:  5'- gGACCCcCAUGcacucaGACCCccgUGCCCACAa- -3'
miRNA:   3'- -CUGGGuGUAC------CUGGGa--ACGGGUGUac -5'
3844 3' -56.2 NC_001650.1 + 177917 0.71 0.687349
Target:  5'- uGGCCCAauagGGACCCagggggagUUGCCCACu-- -3'
miRNA:   3'- -CUGGGUgua-CCUGGG--------AACGGGUGuac -5'
3844 3' -56.2 NC_001650.1 + 175078 0.68 0.828294
Target:  5'- -cCCCACAcucaGGACCCcUGCCCcuCAUa -3'
miRNA:   3'- cuGGGUGUa---CCUGGGaACGGGu-GUAc -5'
3844 3' -56.2 NC_001650.1 + 169111 0.67 0.882252
Target:  5'- cGGCCCAgcUGGcACCC-UGCCCGgGUc -3'
miRNA:   3'- -CUGGGUguACC-UGGGaACGGGUgUAc -5'
3844 3' -56.2 NC_001650.1 + 169047 0.66 0.920038
Target:  5'- --gCCACAUGGggauACCC--GCCCACuAUGg -3'
miRNA:   3'- cugGGUGUACC----UGGGaaCGGGUG-UAC- -5'
3844 3' -56.2 NC_001650.1 + 166367 0.69 0.784323
Target:  5'- uACCCAUaAUGcauuuuGACCCUUGCCCAaCAUc -3'
miRNA:   3'- cUGGGUG-UAC------CUGGGAACGGGU-GUAc -5'
3844 3' -56.2 NC_001650.1 + 162805 0.67 0.860339
Target:  5'- uGACCC-CcgGGGCCg-UGCugCCACGUGg -3'
miRNA:   3'- -CUGGGuGuaCCUGGgaACG--GGUGUAC- -5'
3844 3' -56.2 NC_001650.1 + 159259 0.67 0.889121
Target:  5'- -cCCCAgGUGGguGCCCUggGCCCAgCAg- -3'
miRNA:   3'- cuGGGUgUACC--UGGGAa-CGGGU-GUac -5'
3844 3' -56.2 NC_001650.1 + 157767 0.75 0.450002
Target:  5'- gGGCCCACGcUGG-CCUgggUGCCCACGUu -3'
miRNA:   3'- -CUGGGUGU-ACCuGGGa--ACGGGUGUAc -5'
3844 3' -56.2 NC_001650.1 + 157394 0.68 0.839855
Target:  5'- aGGCCCGCGgccuucugcaggaacUGGuaGCCCUgccUGCCCugGUc -3'
miRNA:   3'- -CUGGGUGU---------------ACC--UGGGA---ACGGGugUAc -5'
3844 3' -56.2 NC_001650.1 + 148914 0.7 0.727188
Target:  5'- gGGCCacagGCGUGuGGCCCUgGCCCGCGc- -3'
miRNA:   3'- -CUGGg---UGUAC-CUGGGAaCGGGUGUac -5'
3844 3' -56.2 NC_001650.1 + 146464 0.66 0.914322
Target:  5'- aGACCCGCGgcccuagGcGGCCCggGCgCCGCGa- -3'
miRNA:   3'- -CUGGGUGUa------C-CUGGGaaCG-GGUGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.