miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3844 5' -55.8 NC_001650.1 + 79468 0.67 0.895965
Target:  5'- --gGCGUGGACCCUcuggcUGCCCugAUu-- -3'
miRNA:   3'- gggUGUACCUGGGA-----ACGGGugUAccu -5'
3844 5' -55.8 NC_001650.1 + 175078 0.67 0.889384
Target:  5'- cCCCACAcucaGGACCCcUGCCCcuCAUa-- -3'
miRNA:   3'- -GGGUGUa---CCUGGGaACGGGu-GUAccu -5'
3844 5' -55.8 NC_001650.1 + 131337 0.67 0.889384
Target:  5'- aCCCGCGggugGGGCCCggccggggGCCCuguacgGGAc -3'
miRNA:   3'- -GGGUGUa---CCUGGGaa------CGGGugua--CCU- -5'
3844 5' -55.8 NC_001650.1 + 157688 0.67 0.889384
Target:  5'- cCCCGCGUGGAgg-UUGCCCAgGaGGGa -3'
miRNA:   3'- -GGGUGUACCUgggAACGGGUgUaCCU- -5'
3844 5' -55.8 NC_001650.1 + 2828 0.67 0.889384
Target:  5'- gCCCGCcgGG-UCCggGUCCGCGaGGAg -3'
miRNA:   3'- -GGGUGuaCCuGGGaaCGGGUGUaCCU- -5'
3844 5' -55.8 NC_001650.1 + 169535 0.67 0.889384
Target:  5'- gCCCGCcgGG-UCCggGUCCGCGaGGAg -3'
miRNA:   3'- -GGGUGuaCCuGGGaaCGGGUGUaCCU- -5'
3844 5' -55.8 NC_001650.1 + 8371 0.67 0.889384
Target:  5'- cCCCACAcucaGGACCCcUGCCCcuCAUa-- -3'
miRNA:   3'- -GGGUGUa---CCUGGGaACGGGu-GUAccu -5'
3844 5' -55.8 NC_001650.1 + 38461 0.67 0.889384
Target:  5'- aCCGCcUGGaACCCggcggaccUGCCCGcCAUGGc -3'
miRNA:   3'- gGGUGuACC-UGGGa-------ACGGGU-GUACCu -5'
3844 5' -55.8 NC_001650.1 + 180858 0.68 0.882582
Target:  5'- cCCCACGUGG-CCCgUUGUaaCCAaugGGAg -3'
miRNA:   3'- -GGGUGUACCuGGG-AACG--GGUguaCCU- -5'
3844 5' -55.8 NC_001650.1 + 24765 0.68 0.882582
Target:  5'- uCCCuggGCGUGGGCUCcaugGCCUGCA-GGAu -3'
miRNA:   3'- -GGG---UGUACCUGGGaa--CGGGUGUaCCU- -5'
3844 5' -55.8 NC_001650.1 + 162807 0.68 0.882582
Target:  5'- aCCC-CcgGGGCCg-UGCugCCACGUGGGc -3'
miRNA:   3'- -GGGuGuaCCUGGgaACG--GGUGUACCU- -5'
3844 5' -55.8 NC_001650.1 + 25565 0.68 0.882582
Target:  5'- gCCACcUGGACCCccGUagCCGCcUGGAg -3'
miRNA:   3'- gGGUGuACCUGGGaaCG--GGUGuACCU- -5'
3844 5' -55.8 NC_001650.1 + 128764 0.68 0.882582
Target:  5'- gUCCA---GGACCCUgaccgUGCCCAUGcUGGAg -3'
miRNA:   3'- -GGGUguaCCUGGGA-----ACGGGUGU-ACCU- -5'
3844 5' -55.8 NC_001650.1 + 14151 0.68 0.882582
Target:  5'- cCCCACGUGG-CCCgUUGUaaCCAaugGGAg -3'
miRNA:   3'- -GGGUGUACCuGGG-AACG--GGUguaCCU- -5'
3844 5' -55.8 NC_001650.1 + 175277 0.68 0.875563
Target:  5'- cCCUGCggGGugCCgggguuagGCCC-CAUGGGa -3'
miRNA:   3'- -GGGUGuaCCugGGaa------CGGGuGUACCU- -5'
3844 5' -55.8 NC_001650.1 + 54475 0.68 0.875563
Target:  5'- cCCCugGauuuUGGACCCccUGCUCGCGacccccggauuuUGGAc -3'
miRNA:   3'- -GGGugU----ACCUGGGa-ACGGGUGU------------ACCU- -5'
3844 5' -55.8 NC_001650.1 + 8570 0.68 0.875563
Target:  5'- cCCUGCggGGugCCgggguuagGCCC-CAUGGGa -3'
miRNA:   3'- -GGGUGuaCCugGGaa------CGGGuGUACCU- -5'
3844 5' -55.8 NC_001650.1 + 113361 0.68 0.874849
Target:  5'- cCCCACgAUGGaguugccGCUCUgGCCCAgCAUGGc -3'
miRNA:   3'- -GGGUG-UACC-------UGGGAaCGGGU-GUACCu -5'
3844 5' -55.8 NC_001650.1 + 108153 0.68 0.874134
Target:  5'- uUCCGCGUGGcuggggcgggucCCCgaguucucUGCCUACGUGGGc -3'
miRNA:   3'- -GGGUGUACCu-----------GGGa-------ACGGGUGUACCU- -5'
3844 5' -55.8 NC_001650.1 + 169978 0.68 0.868332
Target:  5'- gUCCAUGUGGGCagggGUCCAUGUGGGc -3'
miRNA:   3'- -GGGUGUACCUGggaaCGGGUGUACCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.