miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
385 3' -52.9 AC_000011.1 + 23743 0.66 0.725328
Target:  5'- cGCUGCUcGAccg-CACCGAgguGCCCcucagcgugGAGGa -3'
miRNA:   3'- -CGACGA-CUuauaGUGGCU---CGGG---------CUCC- -5'
385 3' -52.9 AC_000011.1 + 16553 0.67 0.703014
Target:  5'- uGCUGCcGAccgcggCGCCGcGCCgGGGGu -3'
miRNA:   3'- -CGACGaCUuaua--GUGGCuCGGgCUCC- -5'
385 3' -52.9 AC_000011.1 + 27161 0.67 0.672431
Target:  5'- cGCUGCUucgcucgGGAUcUCGCCGaguuugccuacuuugAgcuGCCCGAGGa -3'
miRNA:   3'- -CGACGA-------CUUAuAGUGGC---------------U---CGGGCUCC- -5'
385 3' -52.9 AC_000011.1 + 17890 0.68 0.634666
Target:  5'- cGCUGCUGAcgcaCACggaCGAGCCgcccccguaCGAGGa -3'
miRNA:   3'- -CGACGACUuauaGUG---GCUCGG---------GCUCC- -5'
385 3' -52.9 AC_000011.1 + 3156 0.68 0.600298
Target:  5'- uGCUGCUGGAgcccgaugccaUGUCcagAgUGAGCCUGAcGGg -3'
miRNA:   3'- -CGACGACUU-----------AUAG---UgGCUCGGGCU-CC- -5'
385 3' -52.9 AC_000011.1 + 16587 0.68 0.600298
Target:  5'- cCUGCUGcaagGUCA-CGGGCuuGAGGc -3'
miRNA:   3'- cGACGACuua-UAGUgGCUCGggCUCC- -5'
385 3' -52.9 AC_000011.1 + 10174 0.69 0.577516
Target:  5'- cGCUcGgUGGcgGgggCGCCGGGCgCGAGGu -3'
miRNA:   3'- -CGA-CgACUuaUa--GUGGCUCGgGCUCC- -5'
385 3' -52.9 AC_000011.1 + 5131 0.69 0.537047
Target:  5'- uCUGCUGGAUcgaGaugccguagagcacaUCACCGAGCUCuGGGa -3'
miRNA:   3'- cGACGACUUA---U---------------AGUGGCUCGGGcUCC- -5'
385 3' -52.9 AC_000011.1 + 3798 0.74 0.318234
Target:  5'- uGCUGCUGA---UgGCCcAGCUCGAGGc -3'
miRNA:   3'- -CGACGACUuauAgUGGcUCGGGCUCC- -5'
385 3' -52.9 AC_000011.1 + 22629 0.81 0.10735
Target:  5'- gGCUGCacGggUG-CACCGAGgCCGAGGg -3'
miRNA:   3'- -CGACGa-CuuAUaGUGGCUCgGGCUCC- -5'
385 3' -52.9 AC_000011.1 + 11479 1.14 0.00047
Target:  5'- cGCUGCUGAAUAUCACCGAGCCCGAGGg -3'
miRNA:   3'- -CGACGACUUAUAGUGGCUCGGGCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.