miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3856 3' -54.1 NC_001650.1 + 25949 0.66 0.970584
Target:  5'- cAUGCCCCUGGGcauccaggccuccacGGCCGCCAGc----- -3'
miRNA:   3'- -UGUGGGGGUCC---------------UUGGCGGUCuaaaac -5'
3856 3' -54.1 NC_001650.1 + 118261 0.66 0.970584
Target:  5'- -gGCCgCCAGGAACUccucuaucugcucguGCCAGAg---- -3'
miRNA:   3'- ugUGGgGGUCCUUGG---------------CGGUCUaaaac -5'
3856 3' -54.1 NC_001650.1 + 142773 0.66 0.969405
Target:  5'- gGCGuuUCCCCAGGGcgGCgGCCGGGc---- -3'
miRNA:   3'- -UGU--GGGGGUCCU--UGgCGGUCUaaaac -5'
3856 3' -54.1 NC_001650.1 + 156984 0.66 0.969405
Target:  5'- cCACCaCCAGGcaguaguCCGCCAGAg---- -3'
miRNA:   3'- uGUGGgGGUCCuu-----GGCGGUCUaaaac -5'
3856 3' -54.1 NC_001650.1 + 114812 0.66 0.969405
Target:  5'- cACACgCCCAGGG-CgGCCAGu----- -3'
miRNA:   3'- -UGUGgGGGUCCUuGgCGGUCuaaaac -5'
3856 3' -54.1 NC_001650.1 + 17969 0.66 0.969405
Target:  5'- gGCACCCCCGGGggUgaagaagagCGCCc------- -3'
miRNA:   3'- -UGUGGGGGUCCuuG---------GCGGucuaaaac -5'
3856 3' -54.1 NC_001650.1 + 127391 0.66 0.966312
Target:  5'- -aGCCCgCCAGGAGCC-CCgAGAg---- -3'
miRNA:   3'- ugUGGG-GGUCCUUGGcGG-UCUaaaac -5'
3856 3' -54.1 NC_001650.1 + 96241 0.66 0.966312
Target:  5'- gGCGCCCCCGGG--UCGCUGGu----- -3'
miRNA:   3'- -UGUGGGGGUCCuuGGCGGUCuaaaac -5'
3856 3' -54.1 NC_001650.1 + 24465 0.66 0.966312
Target:  5'- uACACCCCCuucAGGAuccugaACCGCCccaacaAGAa---- -3'
miRNA:   3'- -UGUGGGGG---UCCU------UGGCGG------UCUaaaac -5'
3856 3' -54.1 NC_001650.1 + 82480 0.66 0.966312
Target:  5'- cCACCCCCuGGAACCuCUuGAUg--- -3'
miRNA:   3'- uGUGGGGGuCCUUGGcGGuCUAaaac -5'
3856 3' -54.1 NC_001650.1 + 155495 0.66 0.963003
Target:  5'- -gGCCCCCGGGAagaGCUGCgAGu----- -3'
miRNA:   3'- ugUGGGGGUCCU---UGGCGgUCuaaaac -5'
3856 3' -54.1 NC_001650.1 + 124672 0.66 0.963003
Target:  5'- gGCGCCCCCA-GAACa-CCAGAc---- -3'
miRNA:   3'- -UGUGGGGGUcCUUGgcGGUCUaaaac -5'
3856 3' -54.1 NC_001650.1 + 75522 0.66 0.959476
Target:  5'- cGCgACCCCCgAGGAgucgcccagcGCgGCCAGGUc--- -3'
miRNA:   3'- -UG-UGGGGG-UCCU----------UGgCGGUCUAaaac -5'
3856 3' -54.1 NC_001650.1 + 836 0.66 0.959476
Target:  5'- cGCACCCCCccGGGGuCUGCCuGGc---- -3'
miRNA:   3'- -UGUGGGGG--UCCUuGGCGGuCUaaaac -5'
3856 3' -54.1 NC_001650.1 + 83416 0.66 0.959476
Target:  5'- gACGCCCCguGaGGGCUGCgGGAcagUGa -3'
miRNA:   3'- -UGUGGGGguC-CUUGGCGgUCUaaaAC- -5'
3856 3' -54.1 NC_001650.1 + 54463 0.66 0.959476
Target:  5'- aACGCUCCC-GGAcCC-CUGGAUUUUGg -3'
miRNA:   3'- -UGUGGGGGuCCUuGGcGGUCUAAAAC- -5'
3856 3' -54.1 NC_001650.1 + 167543 0.66 0.959476
Target:  5'- cGCACCCCCccGGGGuCUGCCuGGc---- -3'
miRNA:   3'- -UGUGGGGG--UCCUuGGCGGuCUaaaac -5'
3856 3' -54.1 NC_001650.1 + 39390 0.66 0.959476
Target:  5'- aGC-CCCCCAGGcuauACgaGCCAGAa---- -3'
miRNA:   3'- -UGuGGGGGUCCu---UGg-CGGUCUaaaac -5'
3856 3' -54.1 NC_001650.1 + 117141 0.66 0.95911
Target:  5'- uCGCCCCCgugguacuuuaggAGGGGCaCGUCAGAg---- -3'
miRNA:   3'- uGUGGGGG-------------UCCUUG-GCGGUCUaaaac -5'
3856 3' -54.1 NC_001650.1 + 138833 0.66 0.955723
Target:  5'- cACACCCUagGGGAACUguacgggcuggGCCGGGUUg-- -3'
miRNA:   3'- -UGUGGGGg-UCCUUGG-----------CGGUCUAAaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.