miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3858 3' -60.4 NC_001650.1 + 136092 0.66 0.766146
Target:  5'- aAGgCGGGGGCGgCCUugucCAGCCccagGGUCa -3'
miRNA:   3'- aUCgGCUCUCGCaGGA----GUCGGa---CCGG- -5'
3858 3' -60.4 NC_001650.1 + 52951 0.66 0.766146
Target:  5'- gGGCCGGGGGU-UCC-CAGaCCUcuuuaauacucGGCCg -3'
miRNA:   3'- aUCGGCUCUCGcAGGaGUC-GGA-----------CCGG- -5'
3858 3' -60.4 NC_001650.1 + 109820 0.66 0.766146
Target:  5'- -uGUCGGGGGUGaCCUCGuCCaggaUGGCCa -3'
miRNA:   3'- auCGGCUCUCGCaGGAGUcGG----ACCGG- -5'
3858 3' -60.4 NC_001650.1 + 53686 0.66 0.766146
Target:  5'- uUGGCCGAGAGgG-CC--AGCC-GGCUc -3'
miRNA:   3'- -AUCGGCUCUCgCaGGagUCGGaCCGG- -5'
3858 3' -60.4 NC_001650.1 + 131353 0.66 0.766146
Target:  5'- cGGCCGGGGGC--CCUguaCGGgacUCUGGCCa -3'
miRNA:   3'- aUCGGCUCUCGcaGGA---GUC---GGACCGG- -5'
3858 3' -60.4 NC_001650.1 + 92629 0.66 0.756929
Target:  5'- --aCCGGGAGCc-CCUCcaCCUGGCCc -3'
miRNA:   3'- aucGGCUCUCGcaGGAGucGGACCGG- -5'
3858 3' -60.4 NC_001650.1 + 14377 0.66 0.756929
Target:  5'- gAGCCGGGuggccgucuGCGUCaUCuguuGCCaggGGCCa -3'
miRNA:   3'- aUCGGCUCu--------CGCAGgAGu---CGGa--CCGG- -5'
3858 3' -60.4 NC_001650.1 + 181084 0.66 0.756929
Target:  5'- gAGCCGGGuggccgucuGCGUCaUCuguuGCCaggGGCCa -3'
miRNA:   3'- aUCGGCUCu--------CGCAGgAGu---CGGa--CCGG- -5'
3858 3' -60.4 NC_001650.1 + 42738 0.66 0.756929
Target:  5'- gAGgCGAGAgGCGaga--GGCCUGGCCu -3'
miRNA:   3'- aUCgGCUCU-CGCaggagUCGGACCGG- -5'
3858 3' -60.4 NC_001650.1 + 183610 0.66 0.756929
Target:  5'- gGGCCcggggGAGGGCGg---CAGCC-GGCCu -3'
miRNA:   3'- aUCGG-----CUCUCGCaggaGUCGGaCCGG- -5'
3858 3' -60.4 NC_001650.1 + 105125 0.66 0.747609
Target:  5'- -cGCCGAGcggccGCGcCCggAGCCaGGCCc -3'
miRNA:   3'- auCGGCUCu----CGCaGGagUCGGaCCGG- -5'
3858 3' -60.4 NC_001650.1 + 46517 0.66 0.747609
Target:  5'- gGGCCGGcGGCGaCCgggCGcCCUGGCUa -3'
miRNA:   3'- aUCGGCUcUCGCaGGa--GUcGGACCGG- -5'
3858 3' -60.4 NC_001650.1 + 128158 0.66 0.741971
Target:  5'- cGGCCGAGAGUGUCUUUgggGGaaggggagaacauacCCaguggGGCCa -3'
miRNA:   3'- aUCGGCUCUCGCAGGAG---UC---------------GGa----CCGG- -5'
3858 3' -60.4 NC_001650.1 + 49895 0.66 0.739139
Target:  5'- gGGCCccgGGGGGCG-CCgggggggaagacgggUAGUCUGGCCc -3'
miRNA:   3'- aUCGG---CUCUCGCaGGa--------------GUCGGACCGG- -5'
3858 3' -60.4 NC_001650.1 + 47625 0.66 0.738194
Target:  5'- gGGCUGGGuuUGUCUUCGGgCCUGGg- -3'
miRNA:   3'- aUCGGCUCucGCAGGAGUC-GGACCgg -5'
3858 3' -60.4 NC_001650.1 + 60419 0.66 0.728692
Target:  5'- gGGCCuuGAGCcccGUCCUCAGgUUGaGCUg -3'
miRNA:   3'- aUCGGcuCUCG---CAGGAGUCgGAC-CGG- -5'
3858 3' -60.4 NC_001650.1 + 52577 0.66 0.728692
Target:  5'- gAGUCGGGGG-GUCgUCGGCUUcGCCc -3'
miRNA:   3'- aUCGGCUCUCgCAGgAGUCGGAcCGG- -5'
3858 3' -60.4 NC_001650.1 + 160660 0.66 0.728692
Target:  5'- aGGCUGAGGaCGcUCUCGGUaUGGCCa -3'
miRNA:   3'- aUCGGCUCUcGCaGGAGUCGgACCGG- -5'
3858 3' -60.4 NC_001650.1 + 160603 0.66 0.722953
Target:  5'- cAGgCGAGGGacagguugacggucaCGUCCUCuauCCUGGCUa -3'
miRNA:   3'- aUCgGCUCUC---------------GCAGGAGuc-GGACCGG- -5'
3858 3' -60.4 NC_001650.1 + 115180 0.66 0.722953
Target:  5'- aGGCCGAGGGCuUCCacgagaaccaggcgcUCgugAGCaUGGCCa -3'
miRNA:   3'- aUCGGCUCUCGcAGG---------------AG---UCGgACCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.