miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3858 5' -54.7 NC_001650.1 + 111685 0.65 0.959694
Target:  5'- gGUGGuCCAGGAUGG-GGuCGgccccguUGACCGc -3'
miRNA:   3'- -UAUC-GGUCCUAUCuCCuGC-------ACUGGCa -5'
3858 5' -54.7 NC_001650.1 + 23 0.66 0.956342
Target:  5'- -gGGCCuGaGAaaauggAGGGGGCGUGGCCc- -3'
miRNA:   3'- uaUCGGuC-CUa-----UCUCCUGCACUGGca -5'
3858 5' -54.7 NC_001650.1 + 166730 0.66 0.956342
Target:  5'- -gGGCCuGaGAaaauggAGGGGGCGUGGCCc- -3'
miRNA:   3'- uaUCGGuC-CUa-----UCUCCUGCACUGGca -5'
3858 5' -54.7 NC_001650.1 + 153266 0.66 0.956342
Target:  5'- uUGGCCAuguGGGaGGAGGACGUcGCgCGg -3'
miRNA:   3'- uAUCGGU---CCUaUCUCCUGCAcUG-GCa -5'
3858 5' -54.7 NC_001650.1 + 130661 0.66 0.956342
Target:  5'- -aGGCCAGGAgggucaccGGGGGCaaGGCCGc -3'
miRNA:   3'- uaUCGGUCCUau------CUCCUGcaCUGGCa -5'
3858 5' -54.7 NC_001650.1 + 71089 0.66 0.956342
Target:  5'- -cGGUcauCAGGGUGGGGGACaaGACCa- -3'
miRNA:   3'- uaUCG---GUCCUAUCUCCUGcaCUGGca -5'
3858 5' -54.7 NC_001650.1 + 33680 0.66 0.955958
Target:  5'- -aGGCCAGugucugccaaguuGAUAGGGGACGUGGu--- -3'
miRNA:   3'- uaUCGGUC-------------CUAUCUCCUGCACUggca -5'
3858 5' -54.7 NC_001650.1 + 127493 0.66 0.9524
Target:  5'- -gGGCCGGGGaGGGGGGC---GCCGg -3'
miRNA:   3'- uaUCGGUCCUaUCUCCUGcacUGGCa -5'
3858 5' -54.7 NC_001650.1 + 163325 0.66 0.948225
Target:  5'- -cGGCCccGGcGGcGGGGGACGUGACUa- -3'
miRNA:   3'- uaUCGG--UC-CUaUCUCCUGCACUGGca -5'
3858 5' -54.7 NC_001650.1 + 1483 0.66 0.943816
Target:  5'- gGUGGCCAGGuaaGUAGguAGGcAgGUGGCCa- -3'
miRNA:   3'- -UAUCGGUCC---UAUC--UCC-UgCACUGGca -5'
3858 5' -54.7 NC_001650.1 + 133322 0.66 0.943816
Target:  5'- --cGCCGGGcgAGGGGACGc--CCGa -3'
miRNA:   3'- uauCGGUCCuaUCUCCUGCacuGGCa -5'
3858 5' -54.7 NC_001650.1 + 168190 0.66 0.943816
Target:  5'- gGUGGCCAGGuaaGUAGguAGGcAgGUGGCCa- -3'
miRNA:   3'- -UAUCGGUCC---UAUC--UCC-UgCACUGGca -5'
3858 5' -54.7 NC_001650.1 + 31528 0.66 0.939168
Target:  5'- -cGGUCuGGGAUGGGcGGACcUGACCGc -3'
miRNA:   3'- uaUCGG-UCCUAUCU-CCUGcACUGGCa -5'
3858 5' -54.7 NC_001650.1 + 27106 0.66 0.939168
Target:  5'- --cGCuCAGGGUcaGGGACGUG-CCGg -3'
miRNA:   3'- uauCG-GUCCUAucUCCUGCACuGGCa -5'
3858 5' -54.7 NC_001650.1 + 25030 0.67 0.936264
Target:  5'- -gGGCCAGGcggccucgauguucuAcgGGAGcGACGUGGCCa- -3'
miRNA:   3'- uaUCGGUCC---------------Ua-UCUC-CUGCACUGGca -5'
3858 5' -54.7 NC_001650.1 + 103365 0.67 0.93428
Target:  5'- --cGCgGGGcgaGUGGAGGGCGUGaACCu- -3'
miRNA:   3'- uauCGgUCC---UAUCUCCUGCAC-UGGca -5'
3858 5' -54.7 NC_001650.1 + 143574 0.67 0.93428
Target:  5'- -gGGCgAGGGU-GAGGGCGagGGCUGg -3'
miRNA:   3'- uaUCGgUCCUAuCUCCUGCa-CUGGCa -5'
3858 5' -54.7 NC_001650.1 + 57910 0.67 0.93428
Target:  5'- aGUAGCCcGGGUgcacggGGaAGGGCGcGGCCGg -3'
miRNA:   3'- -UAUCGGuCCUA------UC-UCCUGCaCUGGCa -5'
3858 5' -54.7 NC_001650.1 + 182208 0.67 0.92915
Target:  5'- cAUGGCCAauGGggAGAGGGUG-GGCCGg -3'
miRNA:   3'- -UAUCGGU--CCuaUCUCCUGCaCUGGCa -5'
3858 5' -54.7 NC_001650.1 + 15501 0.67 0.92915
Target:  5'- cAUGGCCAauGGggAGAGGGUG-GGCCGg -3'
miRNA:   3'- -UAUCGGU--CCuaUCUCCUGCaCUGGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.