miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
386 5' -54.1 AC_000011.1 + 11524 0.66 0.651618
Target:  5'- uGGUgAacauucUGCAGaGCAUCGUGGUGCagGAg -3'
miRNA:   3'- -CCGgU------ACGUUgCGUAGUACCGCGa-CU- -5'
386 5' -54.1 AC_000011.1 + 22379 0.66 0.617
Target:  5'- cGUCGUGCAcgcagcagcGCGCGUCGuuguUGGCcaGCUGc -3'
miRNA:   3'- cCGGUACGU---------UGCGUAGU----ACCG--CGACu -5'
386 5' -54.1 AC_000011.1 + 20155 0.66 0.605475
Target:  5'- aGGCCGUGUugUGCGcCAUGGgGaaGAa -3'
miRNA:   3'- -CCGGUACGuuGCGUaGUACCgCgaCU- -5'
386 5' -54.1 AC_000011.1 + 15771 0.67 0.571091
Target:  5'- aGCCGgcgGCGGCGCAUCGcccGGCGg--- -3'
miRNA:   3'- cCGGUa--CGUUGCGUAGUa--CCGCgacu -5'
386 5' -54.1 AC_000011.1 + 13092 0.67 0.571091
Target:  5'- cGGUCAUGUcgAGCGC-----GGCGCUGGg -3'
miRNA:   3'- -CCGGUACG--UUGCGuaguaCCGCGACU- -5'
386 5' -54.1 AC_000011.1 + 15865 0.67 0.559727
Target:  5'- gGGCCAUGCucagggcggccaGACGCGcggcuUCA-GGCGCc-- -3'
miRNA:   3'- -CCGGUACG------------UUGCGU-----AGUaCCGCGacu -5'
386 5' -54.1 AC_000011.1 + 4159 0.67 0.559727
Target:  5'- aGUCAUaGCAgggGCGCAgggCAUGGUGUUGc -3'
miRNA:   3'- cCGGUA-CGU---UGCGUa--GUACCGCGACu -5'
386 5' -54.1 AC_000011.1 + 24902 0.67 0.548426
Target:  5'- aGGCCGuUGCGcaGCGUCAgccugaGGCGCUcGGg -3'
miRNA:   3'- -CCGGU-ACGUugCGUAGUa-----CCGCGA-CU- -5'
386 5' -54.1 AC_000011.1 + 3751 0.67 0.548426
Target:  5'- uGGCCAUuCcGCGCAc---GGCGCUGGc -3'
miRNA:   3'- -CCGGUAcGuUGCGUaguaCCGCGACU- -5'
386 5' -54.1 AC_000011.1 + 23790 0.69 0.471776
Target:  5'- cGGUCGaGCAGCGCAUCcuugacgaugGUGGC-CUGc -3'
miRNA:   3'- -CCGGUaCGUUGCGUAG----------UACCGcGACu -5'
386 5' -54.1 AC_000011.1 + 11283 0.69 0.471776
Target:  5'- cGGCCAcgUGC-GCGCG-CGcGGgGCUGAu -3'
miRNA:   3'- -CCGGU--ACGuUGCGUaGUaCCgCGACU- -5'
386 5' -54.1 AC_000011.1 + 16273 0.7 0.420482
Target:  5'- -cCCcgGCGGCGCGUgcaGUGGCGCgggcgGAa -3'
miRNA:   3'- ccGGuaCGUUGCGUAg--UACCGCGa----CU- -5'
386 5' -54.1 AC_000011.1 + 15976 0.7 0.395175
Target:  5'- cGCCGUgGCcGCGCGUCuccggguccugccGGCGCUGGc -3'
miRNA:   3'- cCGGUA-CGuUGCGUAGua-----------CCGCGACU- -5'
386 5' -54.1 AC_000011.1 + 9131 0.75 0.181162
Target:  5'- aGGCCAUGgAACGUuUgGaGGCGCUGGg -3'
miRNA:   3'- -CCGGUACgUUGCGuAgUaCCGCGACU- -5'
386 5' -54.1 AC_000011.1 + 9842 0.75 0.179628
Target:  5'- cGGCCGUGCAuGCGCGUgAgcccgaagccgcgcUGGgGCUGGa -3'
miRNA:   3'- -CCGGUACGU-UGCGUAgU--------------ACCgCGACU- -5'
386 5' -54.1 AC_000011.1 + 12101 1.11 0.000468
Target:  5'- aGGCCAUGCAACGCAUCAUGGCGCUGAc -3'
miRNA:   3'- -CCGGUACGUUGCGUAGUACCGCGACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.