Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3861 | 3' | -56.1 | NC_001650.1 | + | 27896 | 0.68 | 0.859868 |
Target: 5'- cGUggugACGGGGGUGGCGggGGCCu-- -3' miRNA: 3'- aCAaga-UGCCCUCGCUGCa-CCGGucg -5' |
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3861 | 3' | -56.1 | NC_001650.1 | + | 73667 | 0.68 | 0.852229 |
Target: 5'- cUGUUgUUGCGGGGGCGGCuGUuGCUcGCg -3' miRNA: 3'- -ACAA-GAUGCCCUCGCUG-CAcCGGuCG- -5' |
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3861 | 3' | -56.1 | NC_001650.1 | + | 150967 | 0.68 | 0.852229 |
Target: 5'- gGUUCg--GGGGGUGGCGgUGG-CGGCg -3' miRNA: 3'- aCAAGaugCCCUCGCUGC-ACCgGUCG- -5' |
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3861 | 3' | -56.1 | NC_001650.1 | + | 94979 | 0.68 | 0.844397 |
Target: 5'- cGUUCaguuCGGuGGCGAagaGgGGCCAGCa -3' miRNA: 3'- aCAAGau--GCCcUCGCUg--CaCCGGUCG- -5' |
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3861 | 3' | -56.1 | NC_001650.1 | + | 66885 | 0.68 | 0.844397 |
Target: 5'- -----gGCGGGGGCGAgcCGggGGCCGGg -3' miRNA: 3'- acaagaUGCCCUCGCU--GCa-CCGGUCg -5' |
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3861 | 3' | -56.1 | NC_001650.1 | + | 175899 | 0.68 | 0.844397 |
Target: 5'- gGggCUAUGGGGGUGuguGgGUGGUgGGCu -3' miRNA: 3'- aCaaGAUGCCCUCGC---UgCACCGgUCG- -5' |
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3861 | 3' | -56.1 | NC_001650.1 | + | 9192 | 0.68 | 0.844397 |
Target: 5'- gGggCUAUGGGGGUGuguGgGUGGUgGGCu -3' miRNA: 3'- aCaaGAUGCCCUCGC---UgCACCGgUCG- -5' |
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3861 | 3' | -56.1 | NC_001650.1 | + | 27633 | 0.69 | 0.828179 |
Target: 5'- aGUUCUGCGccGAGCugGGCGUcGGCCuGGCc -3' miRNA: 3'- aCAAGAUGCc-CUCG--CUGCA-CCGG-UCG- -5' |
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3861 | 3' | -56.1 | NC_001650.1 | + | 122038 | 0.69 | 0.819808 |
Target: 5'- cUGUUCgccuuCGaGGAcGCGGCGgGGCUGGCc -3' miRNA: 3'- -ACAAGau---GC-CCU-CGCUGCaCCGGUCG- -5' |
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3861 | 3' | -56.1 | NC_001650.1 | + | 111283 | 0.69 | 0.819808 |
Target: 5'- cGUacUCUGCcaugauggugGGGGGC-ACGUugaaGGCCAGCa -3' miRNA: 3'- aCA--AGAUG----------CCCUCGcUGCA----CCGGUCG- -5' |
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3861 | 3' | -56.1 | NC_001650.1 | + | 168174 | 0.69 | 0.811271 |
Target: 5'- gGUgg-GCGGGuaAGCGG-GUGGCCAGg -3' miRNA: 3'- aCAagaUGCCC--UCGCUgCACCGGUCg -5' |
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3861 | 3' | -56.1 | NC_001650.1 | + | 1467 | 0.69 | 0.811271 |
Target: 5'- gGUgg-GCGGGuaAGCGG-GUGGCCAGg -3' miRNA: 3'- aCAagaUGCCC--UCGCUgCACCGGUCg -5' |
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3861 | 3' | -56.1 | NC_001650.1 | + | 95269 | 0.7 | 0.751364 |
Target: 5'- aGggCcgGCGGGAggcccucgaagucgcGCGugGUccuGGCCAGCa -3' miRNA: 3'- aCaaGa-UGCCCU---------------CGCugCA---CCGGUCG- -5' |
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3861 | 3' | -56.1 | NC_001650.1 | + | 122139 | 0.7 | 0.747566 |
Target: 5'- --cUCggggGCGGGGGCGGCGggagggGGagaCGGCg -3' miRNA: 3'- acaAGa---UGCCCUCGCUGCa-----CCg--GUCG- -5' |
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3861 | 3' | -56.1 | NC_001650.1 | + | 131819 | 0.7 | 0.738003 |
Target: 5'- cUGUUCagGCcGGGGCG--GUGGCCGGCc -3' miRNA: 3'- -ACAAGa-UGcCCUCGCugCACCGGUCG- -5' |
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3861 | 3' | -56.1 | NC_001650.1 | + | 69265 | 0.71 | 0.728351 |
Target: 5'- gGUUCUcuCGGuGGGCGA---GGCCAGCa -3' miRNA: 3'- aCAAGAu-GCC-CUCGCUgcaCCGGUCG- -5' |
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3861 | 3' | -56.1 | NC_001650.1 | + | 50986 | 0.71 | 0.718619 |
Target: 5'- gUGUgcgagCUGCGGGGG-GACGggggcgcgGGCgCGGCg -3' miRNA: 3'- -ACAa----GAUGCCCUCgCUGCa-------CCG-GUCG- -5' |
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3861 | 3' | -56.1 | NC_001650.1 | + | 73417 | 0.71 | 0.718619 |
Target: 5'- ------gUGGGGGCGGCccagGGCCAGCa -3' miRNA: 3'- acaagauGCCCUCGCUGca--CCGGUCG- -5' |
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3861 | 3' | -56.1 | NC_001650.1 | + | 38378 | 0.71 | 0.689026 |
Target: 5'- ---aUUAcCGGGGGCagGGCGUGGaCCAGCu -3' miRNA: 3'- acaaGAU-GCCCUCG--CUGCACC-GGUCG- -5' |
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3861 | 3' | -56.1 | NC_001650.1 | + | 60189 | 0.72 | 0.679059 |
Target: 5'- cGgggUCUGCGG--GCGGCG-GGUCAGCa -3' miRNA: 3'- aCa--AGAUGCCcuCGCUGCaCCGGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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