miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3861 5' -58.7 NC_001650.1 + 127915 0.66 0.820783
Target:  5'- gGGCCUuCCCCGagggccuguuCCuGUCCCACGu-- -3'
miRNA:   3'- aCCGGAuGGGGC----------GGuUAGGGUGUcuc -5'
3861 5' -58.7 NC_001650.1 + 120813 0.66 0.820783
Target:  5'- aGGUCU-CCCUGCCcaagCCCAaccccCAGAGc -3'
miRNA:   3'- aCCGGAuGGGGCGGuua-GGGU-----GUCUC- -5'
3861 5' -58.7 NC_001650.1 + 22566 0.66 0.820783
Target:  5'- aGGCCUGCCUguCGCCcGUCCgggGCGGcGg -3'
miRNA:   3'- aCCGGAUGGG--GCGGuUAGGg--UGUCuC- -5'
3861 5' -58.7 NC_001650.1 + 59959 0.66 0.812337
Target:  5'- aGGUUcagGCCCCGCUccagGGUCagCCGCAGGGc -3'
miRNA:   3'- aCCGGa--UGGGGCGG----UUAG--GGUGUCUC- -5'
3861 5' -58.7 NC_001650.1 + 32247 0.66 0.812337
Target:  5'- gUGGCUgaaacgaccACCCCGUucgCAA-CCCACAGAc -3'
miRNA:   3'- -ACCGGa--------UGGGGCG---GUUaGGGUGUCUc -5'
3861 5' -58.7 NC_001650.1 + 52880 0.66 0.812337
Target:  5'- gGGCC--CCCgGCCGGgcccaCCCGCGGGu -3'
miRNA:   3'- aCCGGauGGGgCGGUUa----GGGUGUCUc -5'
3861 5' -58.7 NC_001650.1 + 16251 0.66 0.807194
Target:  5'- gUGGCCUGCCCacugaccucaugugGCCcg-CCCAUuGGGg -3'
miRNA:   3'- -ACCGGAUGGGg-------------CGGuuaGGGUGuCUC- -5'
3861 5' -58.7 NC_001650.1 + 182958 0.66 0.807194
Target:  5'- gUGGCCUGCCCacugaccucaugugGCCcg-CCCAUuGGGg -3'
miRNA:   3'- -ACCGGAUGGGg-------------CGGuuaGGGUGuCUC- -5'
3861 5' -58.7 NC_001650.1 + 51148 0.66 0.803735
Target:  5'- gGGCC--CCCgGUCAuagugCCCGCGGGGc -3'
miRNA:   3'- aCCGGauGGGgCGGUua---GGGUGUCUC- -5'
3861 5' -58.7 NC_001650.1 + 19361 0.66 0.803735
Target:  5'- gGGCCUcccauccucccGCCCCauaGCUGGUCUCugGGAc -3'
miRNA:   3'- aCCGGA-----------UGGGG---CGGUUAGGGugUCUc -5'
3861 5' -58.7 NC_001650.1 + 83384 0.66 0.803735
Target:  5'- gGGCCgagGCCCUGCCGucgguaCCAgCuGAGg -3'
miRNA:   3'- aCCGGa--UGGGGCGGUuag---GGU-GuCUC- -5'
3861 5' -58.7 NC_001650.1 + 47567 0.67 0.794986
Target:  5'- cGGCUcGCCUgGCacucugCCCGCGGAGc -3'
miRNA:   3'- aCCGGaUGGGgCGguua--GGGUGUCUC- -5'
3861 5' -58.7 NC_001650.1 + 78962 0.67 0.794986
Target:  5'- gGGCgcagaUGCCCCGCgg--CCCAgAGAGc -3'
miRNA:   3'- aCCGg----AUGGGGCGguuaGGGUgUCUC- -5'
3861 5' -58.7 NC_001650.1 + 99831 0.67 0.786097
Target:  5'- aGGCCUccGCCCU-CCAccUUCCACAGAu -3'
miRNA:   3'- aCCGGA--UGGGGcGGUu-AGGGUGUCUc -5'
3861 5' -58.7 NC_001650.1 + 130098 0.67 0.786097
Target:  5'- aGaGCCg--CCCGCCAAgCCCaagGCGGAGa -3'
miRNA:   3'- aC-CGGaugGGGCGGUUaGGG---UGUCUC- -5'
3861 5' -58.7 NC_001650.1 + 106951 0.67 0.786097
Target:  5'- cUGGCg-GCCCUgggggGCgCGGUCaCCACGGAGg -3'
miRNA:   3'- -ACCGgaUGGGG-----CG-GUUAG-GGUGUCUC- -5'
3861 5' -58.7 NC_001650.1 + 111699 0.67 0.786097
Target:  5'- gGGUCgGCCCCGUUGA--CCGCGGGGg -3'
miRNA:   3'- aCCGGaUGGGGCGGUUagGGUGUCUC- -5'
3861 5' -58.7 NC_001650.1 + 161888 0.67 0.786097
Target:  5'- aGGCCcagcacguUGCCCCaGCCGAaggugCCCGCcuccgaguAGAGg -3'
miRNA:   3'- aCCGG--------AUGGGG-CGGUUa----GGGUG--------UCUC- -5'
3861 5' -58.7 NC_001650.1 + 73526 0.67 0.786097
Target:  5'- cUGGCCUGCCCgCugggucCCGGUCCgGCAucgcccGAGg -3'
miRNA:   3'- -ACCGGAUGGG-Gc-----GGUUAGGgUGU------CUC- -5'
3861 5' -58.7 NC_001650.1 + 95957 0.67 0.786097
Target:  5'- gUGGCCccggaGCuCCCGC---UCCCACAGGa -3'
miRNA:   3'- -ACCGGa----UG-GGGCGguuAGGGUGUCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.