miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3865 3' -53.8 NC_001650.1 + 123825 0.66 0.972883
Target:  5'- -gGCCCUGGccGUGGUGAucaaGGA-CAAGAGg -3'
miRNA:   3'- cgCGGGGCC--CACUACU----UCUaGUUCUU- -5'
3865 3' -53.8 NC_001650.1 + 22795 0.66 0.972883
Target:  5'- cGCGUgCgGGGUcAUGggGcUCAAGAc -3'
miRNA:   3'- -CGCGgGgCCCAcUACuuCuAGUUCUu -5'
3865 3' -53.8 NC_001650.1 + 126813 0.66 0.972883
Target:  5'- uGCGCgCCCGGGccgcaGggGGUgGGGGAg -3'
miRNA:   3'- -CGCG-GGGCCCacua-CuuCUAgUUCUU- -5'
3865 3' -53.8 NC_001650.1 + 145639 0.66 0.972049
Target:  5'- cGUGUCCCguGGGUGGUGAaagcguacagagauAGGUCGcgucacGGAAg -3'
miRNA:   3'- -CGCGGGG--CCCACUACU--------------UCUAGU------UCUU- -5'
3865 3' -53.8 NC_001650.1 + 147976 0.66 0.97003
Target:  5'- aGCGCaCCCGGGUGAacucuuUCAGGu- -3'
miRNA:   3'- -CGCG-GGGCCCACUacuucuAGUUCuu -5'
3865 3' -53.8 NC_001650.1 + 114517 0.66 0.966969
Target:  5'- aGCGCCCCGGGauuuccuuaaaUGuaucUGggGAccccggaaguUCGGGGGu -3'
miRNA:   3'- -CGCGGGGCCC-----------ACu---ACuuCU----------AGUUCUU- -5'
3865 3' -53.8 NC_001650.1 + 166144 0.67 0.956477
Target:  5'- -gGCCgCGGGUGGcacucUGGAGAUCuuGAu -3'
miRNA:   3'- cgCGGgGCCCACU-----ACUUCUAGuuCUu -5'
3865 3' -53.8 NC_001650.1 + 158217 0.67 0.954134
Target:  5'- gGUGCCCgGGGUGGUcAGGAUgauguacugccucacCAGGGGg -3'
miRNA:   3'- -CGCGGGgCCCACUAcUUCUA---------------GUUCUU- -5'
3865 3' -53.8 NC_001650.1 + 29222 0.67 0.952525
Target:  5'- cGUGCCCCgaaGGGUGGccGGGcUCAGGAc -3'
miRNA:   3'- -CGCGGGG---CCCACUacUUCuAGUUCUu -5'
3865 3' -53.8 NC_001650.1 + 74738 0.67 0.94834
Target:  5'- gGCGaCCCCGGGUGGcacacGAAGAgccuGAGc -3'
miRNA:   3'- -CGC-GGGGCCCACUa----CUUCUaguuCUU- -5'
3865 3' -53.8 NC_001650.1 + 65592 0.67 0.94834
Target:  5'- gGCGgCUCGGGgcgGAUGGAGAgCGGGc- -3'
miRNA:   3'- -CGCgGGGCCCa--CUACUUCUaGUUCuu -5'
3865 3' -53.8 NC_001650.1 + 23500 0.67 0.943916
Target:  5'- aGCGCCCUGGGgGA-GAAGAacUCGGu-- -3'
miRNA:   3'- -CGCGGGGCCCaCUaCUUCU--AGUUcuu -5'
3865 3' -53.8 NC_001650.1 + 41842 0.67 0.943916
Target:  5'- cCGCCCCGGG-GAaguaucUGGAGAccagcucCAGGAAg -3'
miRNA:   3'- cGCGGGGCCCaCU------ACUUCUa------GUUCUU- -5'
3865 3' -53.8 NC_001650.1 + 30684 0.67 0.939253
Target:  5'- cGCGCCgCGGGgcgaGcgGGAGGggggCGGGAGa -3'
miRNA:   3'- -CGCGGgGCCCa---CuaCUUCUa---GUUCUU- -5'
3865 3' -53.8 NC_001650.1 + 119942 0.68 0.934347
Target:  5'- gGUGCCCCGGGgcuccugcgGGUGgAAGGUCu---- -3'
miRNA:   3'- -CGCGGGGCCCa--------CUAC-UUCUAGuucuu -5'
3865 3' -53.8 NC_001650.1 + 159888 0.68 0.934347
Target:  5'- aGgGCCCCGGGUcccaaaugacuGAUGGu-AUCAAGGu -3'
miRNA:   3'- -CgCGGGGCCCA-----------CUACUucUAGUUCUu -5'
3865 3' -53.8 NC_001650.1 + 61445 0.68 0.929198
Target:  5'- cCGCCUC-GGUGAUGAgggggGGAUCgAAGAGg -3'
miRNA:   3'- cGCGGGGcCCACUACU-----UCUAG-UUCUU- -5'
3865 3' -53.8 NC_001650.1 + 90191 0.68 0.929198
Target:  5'- gGCGCCCCcuggcGGcGGUGggGAagCGGGAGa -3'
miRNA:   3'- -CGCGGGGc----CCaCUACuuCUa-GUUCUU- -5'
3865 3' -53.8 NC_001650.1 + 108838 0.68 0.918168
Target:  5'- aGCGCCaCCGcG-GAUGAGGA-CGAGGAa -3'
miRNA:   3'- -CGCGG-GGCcCaCUACUUCUaGUUCUU- -5'
3865 3' -53.8 NC_001650.1 + 141989 0.68 0.918168
Target:  5'- uGUGUCCCGGGgGAaccucaUGcuGGGGUCGAGAGa -3'
miRNA:   3'- -CGCGGGGCCCaCU------AC--UUCUAGUUCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.