miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3865 5' -56.8 NC_001650.1 + 28430 0.66 0.906367
Target:  5'- ----aCAGgUcCCCCGGGCGgCGGGUg -3'
miRNA:   3'- aaaagGUUgA-GGGGCCCGUgGCUCAg -5'
3865 5' -56.8 NC_001650.1 + 145926 0.66 0.906367
Target:  5'- ---cCCAGgUCCCCGGGCuCCcuGUg -3'
miRNA:   3'- aaaaGGUUgAGGGGCCCGuGGcuCAg -5'
3865 5' -56.8 NC_001650.1 + 115004 0.66 0.906367
Target:  5'- --cUCCAGCg-CCCGcGCGCaCGAGUUg -3'
miRNA:   3'- aaaAGGUUGagGGGCcCGUG-GCUCAG- -5'
3865 5' -56.8 NC_001650.1 + 145503 0.66 0.904518
Target:  5'- -aUUCCGugUCCCgcacgcauCGGGUugugccugauauagGCUGGGUCu -3'
miRNA:   3'- aaAAGGUugAGGG--------GCCCG--------------UGGCUCAG- -5'
3865 5' -56.8 NC_001650.1 + 146511 0.66 0.900124
Target:  5'- ----aCAGCUggCCCaCGGGCACCcGGUUg -3'
miRNA:   3'- aaaagGUUGA--GGG-GCCCGUGGcUCAG- -5'
3865 5' -56.8 NC_001650.1 + 60654 0.66 0.900124
Target:  5'- --cUCCAGCUgCCUGGGguUgGAGa- -3'
miRNA:   3'- aaaAGGUUGAgGGGCCCguGgCUCag -5'
3865 5' -56.8 NC_001650.1 + 80295 0.66 0.89365
Target:  5'- -cUUCaCAAaggucgUCCCCGGGguCCuGGGUCu -3'
miRNA:   3'- aaAAG-GUUg-----AGGGGCCCguGG-CUCAG- -5'
3865 5' -56.8 NC_001650.1 + 107201 0.66 0.886952
Target:  5'- aUUggCAGCU-CUCGGGCacccugACCGAGUCa -3'
miRNA:   3'- aAAagGUUGAgGGGCCCG------UGGCUCAG- -5'
3865 5' -56.8 NC_001650.1 + 50254 0.66 0.88421
Target:  5'- aUUUUCAcuuuuauGCUCCgCGGGCACUgcggccgccugccgGGGUCu -3'
miRNA:   3'- aAAAGGU-------UGAGGgGCCCGUGG--------------CUCAG- -5'
3865 5' -56.8 NC_001650.1 + 131425 0.66 0.880031
Target:  5'- --gUCCuGCg-CCCGGGCcCCGAGg- -3'
miRNA:   3'- aaaAGGuUGagGGGCCCGuGGCUCag -5'
3865 5' -56.8 NC_001650.1 + 127628 0.66 0.872893
Target:  5'- cUUUUuuGGCUUcgccuggagCUCGGGCGCUGAGUUg -3'
miRNA:   3'- -AAAAggUUGAG---------GGGCCCGUGGCUCAG- -5'
3865 5' -56.8 NC_001650.1 + 28429 0.66 0.872167
Target:  5'- --cUCCuGCauagacaagggggUCCUcaCGGGCACCGAGUa -3'
miRNA:   3'- aaaAGGuUG-------------AGGG--GCCCGUGGCUCAg -5'
3865 5' -56.8 NC_001650.1 + 125232 0.66 0.87071
Target:  5'- --cUCCAGCUCcugucccugcuccuCCCGGGC-CCGuGcCa -3'
miRNA:   3'- aaaAGGUUGAG--------------GGGCCCGuGGCuCaG- -5'
3865 5' -56.8 NC_001650.1 + 28717 0.67 0.865542
Target:  5'- ---aCCuuCUCCCUGGGCcUCGGGg- -3'
miRNA:   3'- aaaaGGuuGAGGGGCCCGuGGCUCag -5'
3865 5' -56.8 NC_001650.1 + 160992 0.67 0.865542
Target:  5'- ---cCCAGCaggaccUCCCGGGCGuCCGAGg- -3'
miRNA:   3'- aaaaGGUUGa-----GGGGCCCGU-GGCUCag -5'
3865 5' -56.8 NC_001650.1 + 41478 0.67 0.864795
Target:  5'- ---aCCGcCUCCgcaaacuCCGGGCGCCuGGUCu -3'
miRNA:   3'- aaaaGGUuGAGG-------GGCCCGUGGcUCAG- -5'
3865 5' -56.8 NC_001650.1 + 148124 0.67 0.857983
Target:  5'- --gUCCAGCUCCgagGGGCACUG-GUa -3'
miRNA:   3'- aaaAGGUUGAGGgg-CCCGUGGCuCAg -5'
3865 5' -56.8 NC_001650.1 + 155856 0.67 0.857983
Target:  5'- ---gCC-ACUCCCCGGGCgagacccccaccGCgGGGUUc -3'
miRNA:   3'- aaaaGGuUGAGGGGCCCG------------UGgCUCAG- -5'
3865 5' -56.8 NC_001650.1 + 23893 0.67 0.850223
Target:  5'- ---cCCGcCUCCCCGGGCAagcaCGcGUUc -3'
miRNA:   3'- aaaaGGUuGAGGGGCCCGUg---GCuCAG- -5'
3865 5' -56.8 NC_001650.1 + 124107 0.67 0.842268
Target:  5'- ----gCGGcCUCCgCGGGCGgCGGGUCg -3'
miRNA:   3'- aaaagGUU-GAGGgGCCCGUgGCUCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.