miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
387 5' -55.8 AC_000011.1 + 5835 0.66 0.572127
Target:  5'- uGGaaAagGUGGACcCGCUGGUGGAc- -3'
miRNA:   3'- -CCggUagCACUUGcGCGACCACCUcu -5'
387 5' -55.8 AC_000011.1 + 12803 0.66 0.561038
Target:  5'- aGGCCAUCGgccAgGCGCacGUGGAcGAg -3'
miRNA:   3'- -CCGGUAGCacuUgCGCGacCACCU-CU- -5'
387 5' -55.8 AC_000011.1 + 10928 0.67 0.528161
Target:  5'- cGGCCGcCGUGAGCGgGgCUGGacaGAGu -3'
miRNA:   3'- -CCGGUaGCACUUGCgC-GACCac-CUCu -5'
387 5' -55.8 AC_000011.1 + 17798 0.67 0.496025
Target:  5'- cGCCGgcucCGUGGagAUGcCGCaGGUGGAGGa -3'
miRNA:   3'- cCGGUa---GCACU--UGC-GCGaCCACCUCU- -5'
387 5' -55.8 AC_000011.1 + 19794 0.67 0.485509
Target:  5'- --aCAUCG-GGGCGCGCUGGUcgcuGGAu- -3'
miRNA:   3'- ccgGUAGCaCUUGCGCGACCA----CCUcu -5'
387 5' -55.8 AC_000011.1 + 21739 0.68 0.454623
Target:  5'- uGGCCuucUCGaUGcGCGCGC-GGUGG-GAg -3'
miRNA:   3'- -CCGGu--AGC-ACuUGCGCGaCCACCuCU- -5'
387 5' -55.8 AC_000011.1 + 23753 0.68 0.445566
Target:  5'- gGGCCAgaugcUUGaUGAGCGCGUccucccccccgcucaGGUGGAGGu -3'
miRNA:   3'- -CCGGU-----AGC-ACUUGCGCGa--------------CCACCUCU- -5'
387 5' -55.8 AC_000011.1 + 9842 0.69 0.395307
Target:  5'- cGGCCGUgcaugcgCGUGAGCccgaagccGCGCUGGggcUGGAcGAg -3'
miRNA:   3'- -CCGGUA-------GCACUUG--------CGCGACC---ACCU-CU- -5'
387 5' -55.8 AC_000011.1 + 8397 0.69 0.392521
Target:  5'- aGCCAUCGacgucgccaccaAugGCGC-GGUGGAGAu -3'
miRNA:   3'- cCGGUAGCac----------UugCGCGaCCACCUCU- -5'
387 5' -55.8 AC_000011.1 + 12288 0.69 0.386987
Target:  5'- cGGCC-UgGUGuacAACGCGCUGcUGGAGc -3'
miRNA:   3'- -CCGGuAgCAC---UUGCGCGACcACCUCu -5'
387 5' -55.8 AC_000011.1 + 19753 0.72 0.280171
Target:  5'- cGGCCGg-GUGGugGCGCccucgcUGGUGGAc- -3'
miRNA:   3'- -CCGGUagCACUugCGCG------ACCACCUcu -5'
387 5' -55.8 AC_000011.1 + 20941 0.73 0.239361
Target:  5'- uGGCCgagGUCgGUGAGCGCGCccaUGGacaugaaguugcUGGAGAa -3'
miRNA:   3'- -CCGG---UAG-CACUUGCGCG---ACC------------ACCUCU- -5'
387 5' -55.8 AC_000011.1 + 27825 0.74 0.203638
Target:  5'- aGGUCG-CGacGGugGCGUUGGUGGAGGu -3'
miRNA:   3'- -CCGGUaGCa-CUugCGCGACCACCUCU- -5'
387 5' -55.8 AC_000011.1 + 8849 0.75 0.158762
Target:  5'- cGGCCAcCGUgGAGCGCGCcGGccgcGGAGAc -3'
miRNA:   3'- -CCGGUaGCA-CUUGCGCGaCCa---CCUCU- -5'
387 5' -55.8 AC_000011.1 + 12236 1.11 0.000392
Target:  5'- uGGCCAUCGUGAACGCGCUGGUGGAGAa -3'
miRNA:   3'- -CCGGUAGCACUUGCGCGACCACCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.