miRNA: 3'- ugUGGAUUAGU-CAUGC-CUAC-AC---ACCA- -5'
miRNA: 3'- -UGUGgauUAGucAUGCCUACACACCA- -5'
miRNA: 3'- -UGUGGAUUAGUCAUGCCUACACACCA- -5'
Results 1 - 3 of 3 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 3876 | 5' | -49.5 | NC_001650.1 | + | 75519 | 0.67 | 0.995639 |
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Target: 5'- -aACCUGAUCAuGUGCGcGAUGcUGgccUGGUa -3' miRNA: 3'- ugUGGAUUAGU-CAUGC-CUAC-AC---ACCA- -5' |
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| 3876 | 5' | -49.5 | NC_001650.1 | + | 146121 | 0.71 | 0.960485 |
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Target: 5'- aACACa--AUCuaUACGGGUGUGUGGUa -3' miRNA: 3'- -UGUGgauUAGucAUGCCUACACACCA- -5' |
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| 3876 | 5' | -49.5 | NC_001650.1 | + | 38132 | 1.08 | 0.015744 |
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Target: 5'- uACACCUAAUCAGUACGGAUGUGUGGUg -3' miRNA: 3'- -UGUGGAUUAGUCAUGCCUACACACCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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