miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
388 3' -55.4 AC_000011.1 + 18554 0.66 0.561369
Target:  5'- gGCCgUGGgcgACAAC-CGCgUGCUGGAc -3'
miRNA:   3'- -CGG-ACCacaUGUUGcGCG-ACGACCUc -5'
388 3' -55.4 AC_000011.1 + 20940 0.66 0.554662
Target:  5'- gGCCgaGGUcgGUG-AGCGCGCccauggacaugaaguUGCUGGAGa -3'
miRNA:   3'- -CGGa-CCA--CAUgUUGCGCG---------------ACGACCUC- -5'
388 3' -55.4 AC_000011.1 + 24593 0.66 0.543538
Target:  5'- cGCCUGGg--GCAgaACGUGCUGCacaccacccugcgcGGGGa -3'
miRNA:   3'- -CGGACCacaUGU--UGCGCGACGa-------------CCUC- -5'
388 3' -55.4 AC_000011.1 + 15268 0.68 0.463988
Target:  5'- aGCgaGGUGaagGC-GCGCaGCUGCUGcGAGu -3'
miRNA:   3'- -CGgaCCACa--UGuUGCG-CGACGAC-CUC- -5'
388 3' -55.4 AC_000011.1 + 24414 0.69 0.394706
Target:  5'- uCCUGGUG-AC--CGUGgaGCUGGAGu -3'
miRNA:   3'- cGGACCACaUGuuGCGCgaCGACCUC- -5'
388 3' -55.4 AC_000011.1 + 13548 0.7 0.367129
Target:  5'- aGCCUGGUGgACAagAUGaGCcGCUGGAa -3'
miRNA:   3'- -CGGACCACaUGU--UGCgCGaCGACCUc -5'
388 3' -55.4 AC_000011.1 + 24129 0.7 0.358237
Target:  5'- cCCUGGUcgaguuggaaGgcgACAACGCGCgGCUGGcGg -3'
miRNA:   3'- cGGACCA----------Ca--UGUUGCGCGaCGACCuC- -5'
388 3' -55.4 AC_000011.1 + 33911 0.7 0.349496
Target:  5'- cGUCUGGUGcggcgggcGCAGCGCGCaUGC-GGAu -3'
miRNA:   3'- -CGGACCACa-------UGUUGCGCG-ACGaCCUc -5'
388 3' -55.4 AC_000011.1 + 9889 0.7 0.344325
Target:  5'- cGCCaGGUcGgcgACGACGCGCucggcgaggauggcuUGCUGGAu -3'
miRNA:   3'- -CGGaCCA-Ca--UGUUGCGCG---------------ACGACCUc -5'
388 3' -55.4 AC_000011.1 + 12233 0.71 0.292619
Target:  5'- uCCUGGccaucGUG-AACGCGCUGgUGGAGa -3'
miRNA:   3'- cGGACCa----CAUgUUGCGCGACgACCUC- -5'
388 3' -55.4 AC_000011.1 + 12289 1.1 0.000472
Target:  5'- gGCCUGGUGUACAACGCGCUGCUGGAGc -3'
miRNA:   3'- -CGGACCACAUGUUGCGCGACGACCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.