miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
388 5' -51.8 AC_000011.1 + 33875 0.68 0.664645
Target:  5'- aCGgaGCGGCGGCGgCAGCGacugcUGCGGGg -3'
miRNA:   3'- -GCgaUGUUGUCGUgGUUGC-----ACGUCUg -5'
388 5' -51.8 AC_000011.1 + 22453 0.67 0.676317
Target:  5'- aGCUggccaacaACGACGcGCGCUgcuGCGUGCAcGACg -3'
miRNA:   3'- gCGA--------UGUUGU-CGUGGu--UGCACGU-CUG- -5'
388 5' -51.8 AC_000011.1 + 22091 0.66 0.744882
Target:  5'- uGCUGCAACcccguGUACCGcaacucccGCGcGCAGAa -3'
miRNA:   3'- gCGAUGUUGu----CGUGGU--------UGCaCGUCUg -5'
388 5' -51.8 AC_000011.1 + 25150 0.66 0.755935
Target:  5'- gGUUGCAGCGGCAgUGGCacucgaGCAGGCc -3'
miRNA:   3'- gCGAUGUUGUCGUgGUUGca----CGUCUG- -5'
388 5' -51.8 AC_000011.1 + 18125 0.68 0.641208
Target:  5'- gCGCgcggGCcACGGcCACCGGCG-GCAGGg -3'
miRNA:   3'- -GCGa---UGuUGUC-GUGGUUGCaCGUCUg -5'
388 5' -51.8 AC_000011.1 + 8577 0.7 0.547997
Target:  5'- cCGCgc--GCGGCGCCGACGUGCc--- -3'
miRNA:   3'- -GCGauguUGUCGUGGUUGCACGucug -5'
388 5' -51.8 AC_000011.1 + 16989 0.7 0.525252
Target:  5'- uGCcGCggUAGC-CCGGCGUGgGGAUg -3'
miRNA:   3'- gCGaUGuuGUCGuGGUUGCACgUCUG- -5'
388 5' -51.8 AC_000011.1 + 25199 0.72 0.438488
Target:  5'- uCGCU-CAGCAGCuggggguugcagGCCAgggagcggugcgGCGUGCAGAg -3'
miRNA:   3'- -GCGAuGUUGUCG------------UGGU------------UGCACGUCUg -5'
388 5' -51.8 AC_000011.1 + 12763 0.72 0.438488
Target:  5'- aGCaGCAGCAGCAggcgcgaguUCGGCGUcaGCAGGCu -3'
miRNA:   3'- gCGaUGUUGUCGU---------GGUUGCA--CGUCUG- -5'
388 5' -51.8 AC_000011.1 + 13413 0.73 0.379082
Target:  5'- cCGCcGCGGCAGCACCcucGCG-GcCGGACa -3'
miRNA:   3'- -GCGaUGUUGUCGUGGu--UGCaC-GUCUG- -5'
388 5' -51.8 AC_000011.1 + 3734 0.73 0.369719
Target:  5'- gCGCUggcggcagauGCAGCAGCugCGGCG-GCAGcuGCg -3'
miRNA:   3'- -GCGA----------UGUUGUCGugGUUGCaCGUC--UG- -5'
388 5' -51.8 AC_000011.1 + 16673 0.66 0.766846
Target:  5'- gCGCUugGGCaccaucAGCugCAugGUGgGGuACa -3'
miRNA:   3'- -GCGAugUUG------UCGugGUugCACgUC-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.