Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
388 | 5' | -51.8 | AC_000011.1 | + | 15887 | 0.7 | 0.536583 |
Target: 5'- aCGC-GCGGCuucaGGCGCCAGCGccgGCAGGa -3' miRNA: 3'- -GCGaUGUUG----UCGUGGUUGCa--CGUCUg -5' |
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388 | 5' | -51.8 | AC_000011.1 | + | 19254 | 0.7 | 0.536583 |
Target: 5'- -aCUACAACAGCACUGGCaauauggggGUGCuGGCc -3' miRNA: 3'- gcGAUGUUGUCGUGGUUG---------CACGuCUG- -5' |
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388 | 5' | -51.8 | AC_000011.1 | + | 16989 | 0.7 | 0.525252 |
Target: 5'- uGCcGCggUAGC-CCGGCGUGgGGAUg -3' miRNA: 3'- gCGaUGuuGUCGuGGUUGCACgUCUG- -5' |
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388 | 5' | -51.8 | AC_000011.1 | + | 17633 | 0.7 | 0.514013 |
Target: 5'- gGCgUGgAACAGCACCAcaggGCAGGCg -3' miRNA: 3'- gCG-AUgUUGUCGUGGUugcaCGUCUG- -5' |
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388 | 5' | -51.8 | AC_000011.1 | + | 3473 | 0.71 | 0.47012 |
Target: 5'- uGUUGCAGCAGCAUgAGCGgaaGCGG-Cu -3' miRNA: 3'- gCGAUGUUGUCGUGgUUGCa--CGUCuG- -5' |
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388 | 5' | -51.8 | AC_000011.1 | + | 12763 | 0.72 | 0.438488 |
Target: 5'- aGCaGCAGCAGCAggcgcgaguUCGGCGUcaGCAGGCu -3' miRNA: 3'- gCGaUGUUGUCGU---------GGUUGCA--CGUCUG- -5' |
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388 | 5' | -51.8 | AC_000011.1 | + | 25199 | 0.72 | 0.438488 |
Target: 5'- uCGCU-CAGCAGCuggggguugcagGCCAgggagcggugcgGCGUGCAGAg -3' miRNA: 3'- -GCGAuGUUGUCG------------UGGU------------UGCACGUCUg -5' |
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388 | 5' | -51.8 | AC_000011.1 | + | 13413 | 0.73 | 0.379082 |
Target: 5'- cCGCcGCGGCAGCACCcucGCG-GcCGGACa -3' miRNA: 3'- -GCGaUGUUGUCGUGGu--UGCaC-GUCUG- -5' |
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388 | 5' | -51.8 | AC_000011.1 | + | 3734 | 0.73 | 0.369719 |
Target: 5'- gCGCUggcggcagauGCAGCAGCugCGGCG-GCAGcuGCg -3' miRNA: 3'- -GCGA----------UGUUGUCGugGUUGCaCGUC--UG- -5' |
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388 | 5' | -51.8 | AC_000011.1 | + | 16802 | 0.76 | 0.255675 |
Target: 5'- aGCccaGCAcCAGCACCAugGaggUGCAGACg -3' miRNA: 3'- gCGa--UGUuGUCGUGGUugC---ACGUCUG- -5' |
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388 | 5' | -51.8 | AC_000011.1 | + | 11013 | 0.79 | 0.157721 |
Target: 5'- uCGCcGgAGCGGCACCcgcGCGUGCAGAUg -3' miRNA: 3'- -GCGaUgUUGUCGUGGu--UGCACGUCUG- -5' |
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388 | 5' | -51.8 | AC_000011.1 | + | 12324 | 1.1 | 0.001074 |
Target: 5'- cCGCUACAACAGCACCAACGUGCAGACc -3' miRNA: 3'- -GCGAUGUUGUCGUGGUUGCACGUCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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