miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3885 3' -51.3 NC_001650.1 + 37864 0.67 0.991481
Target:  5'- uGUUuGUGcaGUCCcccaagGGGAAGCUGAGg -3'
miRNA:   3'- gCAAuCAC--CAGGca----CCCUUCGAUUCa -5'
3885 3' -51.3 NC_001650.1 + 80078 0.67 0.987583
Target:  5'- gCGUUAGUGGUUguagaugauguaguaGUGGG-AGCggGAGUg -3'
miRNA:   3'- -GCAAUCACCAGg--------------CACCCuUCGa-UUCA- -5'
3885 3' -51.3 NC_001650.1 + 90819 0.68 0.982025
Target:  5'- uGUUGGUGGUCCacaggGUGGGGGuGCc---- -3'
miRNA:   3'- gCAAUCACCAGG-----CACCCUU-CGauuca -5'
3885 3' -51.3 NC_001650.1 + 40062 0.68 0.977558
Target:  5'- --aUGGUGGUCa--GGGAguGGCUGAGg -3'
miRNA:   3'- gcaAUCACCAGgcaCCCU--UCGAUUCa -5'
3885 3' -51.3 NC_001650.1 + 81888 0.69 0.962899
Target:  5'- uGggAGUGGUCCcccGGGAucuGCUGGGc -3'
miRNA:   3'- gCaaUCACCAGGca-CCCUu--CGAUUCa -5'
3885 3' -51.3 NC_001650.1 + 28223 0.7 0.942614
Target:  5'- aCG-UGGUGGUCaCGcaGGGggGCUcGGUg -3'
miRNA:   3'- -GCaAUCACCAG-GCa-CCCuuCGAuUCA- -5'
3885 3' -51.3 NC_001650.1 + 75232 0.72 0.876439
Target:  5'- aGgaGGUGGUCCacaGGGAcgGGCUGAGg -3'
miRNA:   3'- gCaaUCACCAGGca-CCCU--UCGAUUCa -5'
3885 3' -51.3 NC_001650.1 + 141489 0.73 0.861313
Target:  5'- gCGUggUAGUGGUCUGUGc-AAGCUAGGUg -3'
miRNA:   3'- -GCA--AUCACCAGGCACccUUCGAUUCA- -5'
3885 3' -51.3 NC_001650.1 + 139412 0.75 0.754612
Target:  5'- --cUAGUGGUCCGguaaaGaGGAAGCUAGGc -3'
miRNA:   3'- gcaAUCACCAGGCa----C-CCUUCGAUUCa -5'
3885 3' -51.3 NC_001650.1 + 21992 0.78 0.590085
Target:  5'- -uUUAGUGGUCCaUGGGcgcAAGCUAGGUa -3'
miRNA:   3'- gcAAUCACCAGGcACCC---UUCGAUUCA- -5'
3885 3' -51.3 NC_001650.1 + 42688 1.07 0.012157
Target:  5'- gCGUUAGUGGUCCGUGGGAAGCUAAGUu -3'
miRNA:   3'- -GCAAUCACCAGGCACCCUUCGAUUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.