miRNA display CGI


Results 21 - 40 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3885 5' -51.8 NC_001650.1 + 51515 0.66 0.989258
Target:  5'- uCGCCgAGCUgGCcCAG-CCACUgGCCa -3'
miRNA:   3'- uGUGGaUCGAaCGuGUCuGGUGA-UGG- -5'
3885 5' -51.8 NC_001650.1 + 125543 0.66 0.989258
Target:  5'- uGCGCCgcguccAGCgugGCgaggaccaggGCGGACCACcACCu -3'
miRNA:   3'- -UGUGGa-----UCGaa-CG----------UGUCUGGUGaUGG- -5'
3885 5' -51.8 NC_001650.1 + 157559 0.66 0.989258
Target:  5'- aGCGCCUccuguggcAGCUUggagagGUACAGcACCGC-GCCg -3'
miRNA:   3'- -UGUGGA--------UCGAA------CGUGUC-UGGUGaUGG- -5'
3885 5' -51.8 NC_001650.1 + 130474 0.66 0.989258
Target:  5'- --gUCUGGC-UGCACAGgACCuucaaggcccuGCUGCCc -3'
miRNA:   3'- uguGGAUCGaACGUGUC-UGG-----------UGAUGG- -5'
3885 5' -51.8 NC_001650.1 + 70286 0.66 0.989258
Target:  5'- uCGCCcaUGGCgacggGCGCAGGCC-C-ACCa -3'
miRNA:   3'- uGUGG--AUCGaa---CGUGUCUGGuGaUGG- -5'
3885 5' -51.8 NC_001650.1 + 65686 0.66 0.989258
Target:  5'- uGCGCUcGGCaggGCuCAGGCagaGCUACCu -3'
miRNA:   3'- -UGUGGaUCGaa-CGuGUCUGg--UGAUGG- -5'
3885 5' -51.8 NC_001650.1 + 95422 0.66 0.987798
Target:  5'- cACGCC-AGCU--CGCAGuCCACggGCCu -3'
miRNA:   3'- -UGUGGaUCGAacGUGUCuGGUGa-UGG- -5'
3885 5' -51.8 NC_001650.1 + 101217 0.66 0.98619
Target:  5'- aGCGCCU-GCUcgugUGCACGGAcagguucuucuCCACggGCUg -3'
miRNA:   3'- -UGUGGAuCGA----ACGUGUCU-----------GGUGa-UGG- -5'
3885 5' -51.8 NC_001650.1 + 73487 0.66 0.98619
Target:  5'- gGCugCUggGGC-UGCugAGGCUguuGCUGCUg -3'
miRNA:   3'- -UGugGA--UCGaACGugUCUGG---UGAUGG- -5'
3885 5' -51.8 NC_001650.1 + 75375 0.66 0.98602
Target:  5'- -gACCUGGgUgggcagcUGCACGGcCCGCUcCCa -3'
miRNA:   3'- ugUGGAUCgA-------ACGUGUCuGGUGAuGG- -5'
3885 5' -51.8 NC_001650.1 + 35289 0.67 0.984423
Target:  5'- -gGCCggGGaCggGCGCGGGCCAggGCCa -3'
miRNA:   3'- ugUGGa-UC-GaaCGUGUCUGGUgaUGG- -5'
3885 5' -51.8 NC_001650.1 + 107633 0.67 0.984423
Target:  5'- aACACCcugAGCUgcgGC-CAGGCCAUcgucuCCa -3'
miRNA:   3'- -UGUGGa--UCGAa--CGuGUCUGGUGau---GG- -5'
3885 5' -51.8 NC_001650.1 + 44537 0.67 0.984237
Target:  5'- uGCACCUAGCUUuuuggaccagGCACuGAaaccCCAUacuggcuUGCCg -3'
miRNA:   3'- -UGUGGAUCGAA----------CGUGuCU----GGUG-------AUGG- -5'
3885 5' -51.8 NC_001650.1 + 157752 0.67 0.98249
Target:  5'- uACACgaAGCc-GCACGGGCCcACgcugGCCu -3'
miRNA:   3'- -UGUGgaUCGaaCGUGUCUGG-UGa---UGG- -5'
3885 5' -51.8 NC_001650.1 + 122956 0.67 0.98249
Target:  5'- -gACCUcgcgcGGCUggaGCAGGCCACcGCCc -3'
miRNA:   3'- ugUGGA-----UCGAacgUGUCUGGUGaUGG- -5'
3885 5' -51.8 NC_001650.1 + 46629 0.67 0.98249
Target:  5'- uACACCaGGCUgaaccUGCuCA-ACUACUGCCa -3'
miRNA:   3'- -UGUGGaUCGA-----ACGuGUcUGGUGAUGG- -5'
3885 5' -51.8 NC_001650.1 + 26635 0.67 0.98249
Target:  5'- -uGCCcaggGGCg-GCGCGGugCugUACCu -3'
miRNA:   3'- ugUGGa---UCGaaCGUGUCugGugAUGG- -5'
3885 5' -51.8 NC_001650.1 + 101517 0.67 0.981876
Target:  5'- cGCcCCUAGCUUGCGCaacgccucagAGaACCGCccguggucaaagggUACCu -3'
miRNA:   3'- -UGuGGAUCGAACGUG----------UC-UGGUG--------------AUGG- -5'
3885 5' -51.8 NC_001650.1 + 120912 0.67 0.97809
Target:  5'- aGCACCgccgcgAGCUgcgcGCGCuGGCCAagaGCCu -3'
miRNA:   3'- -UGUGGa-----UCGAa---CGUGuCUGGUga-UGG- -5'
3885 5' -51.8 NC_001650.1 + 89156 0.67 0.97809
Target:  5'- cCGCCUGGCggaCAgGGuCCugUGCCc -3'
miRNA:   3'- uGUGGAUCGaacGUgUCuGGugAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.