miRNA display CGI


Results 21 - 27 of 27 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
389 3' -58.5 AC_000011.1 + 23767 0.69 0.275543
Target:  5'- ---cCCUCAGCguggaggaGCUCAGCCgCGCCuACg -3'
miRNA:   3'- ggaaGGAGUCG--------UGGGUCGG-GCGGuUG- -5'
389 3' -58.5 AC_000011.1 + 20614 0.69 0.274835
Target:  5'- uCCUUCUUCcGCAacuUCCAGCCCaugagccGCCAGg -3'
miRNA:   3'- -GGAAGGAGuCGU---GGGUCGGG-------CGGUUg -5'
389 3' -58.5 AC_000011.1 + 26513 0.7 0.21177
Target:  5'- ----gCUCAGCGCCgGGCCCGCgAu- -3'
miRNA:   3'- ggaagGAGUCGUGGgUCGGGCGgUug -5'
389 3' -58.5 AC_000011.1 + 26176 0.71 0.190035
Target:  5'- -gUUCCUCAGCuCCCGGgUuugCGCCGGCu -3'
miRNA:   3'- ggAAGGAGUCGuGGGUCgG---GCGGUUG- -5'
389 3' -58.5 AC_000011.1 + 5290 0.72 0.156697
Target:  5'- ---cCCUCgcaAGCGCCCAGCCCGgCGcGCa -3'
miRNA:   3'- ggaaGGAG---UCGUGGGUCGGGCgGU-UG- -5'
389 3' -58.5 AC_000011.1 + 11230 0.73 0.140108
Target:  5'- uCCUcgucCCUCAGCACCCucuuucgguccaGGCCgCGCCGcaGCu -3'
miRNA:   3'- -GGAa---GGAGUCGUGGG------------UCGG-GCGGU--UG- -5'
389 3' -58.5 AC_000011.1 + 12448 1.11 0.000169
Target:  5'- gCCUUCCUCAGCACCCAGCCCGCCAACg -3'
miRNA:   3'- -GGAAGGAGUCGUGGGUCGGGCGGUUG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.