miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3890 3' -60.3 NC_001650.1 + 119704 0.66 0.746714
Target:  5'- ---aCCAGGgGCCCCACGG-GGCucaGGa -3'
miRNA:   3'- uuucGGUCCgCGGGGUGUCaUCG---CCa -5'
3890 3' -60.3 NC_001650.1 + 49770 0.66 0.746714
Target:  5'- -cAGCCGGuGUGCCUCAUAG-GGgGGa -3'
miRNA:   3'- uuUCGGUC-CGCGGGGUGUCaUCgCCa -5'
3890 3' -60.3 NC_001650.1 + 39646 0.66 0.737176
Target:  5'- cGGGCCAGGCgguaGCUCUGCugagGGCGGg -3'
miRNA:   3'- uUUCGGUCCG----CGGGGUGuca-UCGCCa -5'
3890 3' -60.3 NC_001650.1 + 60615 0.66 0.737176
Target:  5'- uGGGGCgUAGGCGCCCUGcCGGUugAGgGGg -3'
miRNA:   3'- -UUUCG-GUCCGCGGGGU-GUCA--UCgCCa -5'
3890 3' -60.3 NC_001650.1 + 74948 0.66 0.727552
Target:  5'- cGAGCgGGGCGCCCCcCAcUAucgccaccccGCGGg -3'
miRNA:   3'- uUUCGgUCCGCGGGGuGUcAU----------CGCCa -5'
3890 3' -60.3 NC_001650.1 + 47340 0.66 0.727552
Target:  5'- uGGAGcCCGGGuCGCCCCGCccgAGCGc- -3'
miRNA:   3'- -UUUC-GGUCC-GCGGGGUGucaUCGCca -5'
3890 3' -60.3 NC_001650.1 + 133925 0.66 0.727552
Target:  5'- -cAGCUggGGGCGCCCCcCAGaccccggcaGGCGGc -3'
miRNA:   3'- uuUCGG--UCCGCGGGGuGUCa--------UCGCCa -5'
3890 3' -60.3 NC_001650.1 + 109167 0.66 0.717847
Target:  5'- cGAGCCAGGCgGUCCCGCucu-GCGu- -3'
miRNA:   3'- uUUCGGUCCG-CGGGGUGucauCGCca -5'
3890 3' -60.3 NC_001650.1 + 20193 0.66 0.708072
Target:  5'- -uGGCCAuacuGGaaGCCaCGCGGUGGCGGUa -3'
miRNA:   3'- uuUCGGU----CCg-CGGgGUGUCAUCGCCA- -5'
3890 3' -60.3 NC_001650.1 + 65913 0.66 0.708072
Target:  5'- cAGGUCAGaGUGCCCCcuguGCGG-GGCGGc -3'
miRNA:   3'- uUUCGGUC-CGCGGGG----UGUCaUCGCCa -5'
3890 3' -60.3 NC_001650.1 + 91591 0.66 0.698235
Target:  5'- aAGGGCCAGGUggagggGCUCC-CGGUacgagAGCGGg -3'
miRNA:   3'- -UUUCGGUCCG------CGGGGuGUCA-----UCGCCa -5'
3890 3' -60.3 NC_001650.1 + 68809 0.66 0.698235
Target:  5'- cAGGCCGGG-GCCCuCGCucgAGgGGCGGg -3'
miRNA:   3'- uUUCGGUCCgCGGG-GUG---UCaUCGCCa -5'
3890 3' -60.3 NC_001650.1 + 51455 0.66 0.698235
Target:  5'- uGAGCguGGC-CgUCACGGUGGUGGg -3'
miRNA:   3'- uUUCGguCCGcGgGGUGUCAUCGCCa -5'
3890 3' -60.3 NC_001650.1 + 106935 0.66 0.688345
Target:  5'- gAAGGCCAucuguucccuGGCGgCCCugGGgggcGCGGUc -3'
miRNA:   3'- -UUUCGGU----------CCGCgGGGugUCau--CGCCA- -5'
3890 3' -60.3 NC_001650.1 + 131115 0.66 0.688345
Target:  5'- gGGAGUCccuccgGGGCGCCCCugAGacUGGCGc- -3'
miRNA:   3'- -UUUCGG------UCCGCGGGGugUC--AUCGCca -5'
3890 3' -60.3 NC_001650.1 + 122245 0.66 0.688345
Target:  5'- gGGGGCgAGGUGCCCCACG--AGCu-- -3'
miRNA:   3'- -UUUCGgUCCGCGGGGUGUcaUCGcca -5'
3890 3' -60.3 NC_001650.1 + 87385 0.67 0.67841
Target:  5'- -uGGCCAGcGCGCCCagaaaGUAGUAGaCGGc -3'
miRNA:   3'- uuUCGGUC-CGCGGGg----UGUCAUC-GCCa -5'
3890 3' -60.3 NC_001650.1 + 56882 0.67 0.67841
Target:  5'- --cGUCAgGGCGuCCCCcCAGuUGGCGGa -3'
miRNA:   3'- uuuCGGU-CCGC-GGGGuGUC-AUCGCCa -5'
3890 3' -60.3 NC_001650.1 + 29118 0.67 0.67841
Target:  5'- ---cCCAcGGcCGUCuCCACGGUGGCGGg -3'
miRNA:   3'- uuucGGU-CC-GCGG-GGUGUCAUCGCCa -5'
3890 3' -60.3 NC_001650.1 + 52721 0.67 0.658439
Target:  5'- -cGGuCCAGGgGgC-CACGGUGGCGGUc -3'
miRNA:   3'- uuUC-GGUCCgCgGgGUGUCAUCGCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.