miRNA display CGI


Results 1 - 20 of 256 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3897 3' -51.3 NC_001650.1 + 124300 0.66 0.995361
Target:  5'- aGGGaCGAGGCCGcgGcggacgagguggcgcGAGuCCUCC-CCa -3'
miRNA:   3'- gUCC-GCUUCGGUuuU---------------UUC-GGAGGaGG- -5'
3897 3' -51.3 NC_001650.1 + 105063 0.66 0.995143
Target:  5'- uGGGUauacuuauuauccagGAGGCCAGAgaggacgcucagggGAcuGGcCCUCCUCCc -3'
miRNA:   3'- gUCCG---------------CUUCGGUUU--------------UU--UC-GGAGGAGG- -5'
3897 3' -51.3 NC_001650.1 + 124267 0.66 0.995068
Target:  5'- uGGaGCGggGCCu--GAA-CCUgCUCCu -3'
miRNA:   3'- gUC-CGCuuCGGuuuUUUcGGAgGAGG- -5'
3897 3' -51.3 NC_001650.1 + 122728 0.66 0.995068
Target:  5'- gCAGGCG--GCCAGGAAaagauGGCCgccagcgucgCCUUCu -3'
miRNA:   3'- -GUCCGCuuCGGUUUUU-----UCGGa---------GGAGG- -5'
3897 3' -51.3 NC_001650.1 + 115164 0.66 0.995068
Target:  5'- --cGCGAGGUCucccuGGAGGCCgagggCUUCCa -3'
miRNA:   3'- gucCGCUUCGGuu---UUUUCGGa----GGAGG- -5'
3897 3' -51.3 NC_001650.1 + 135041 0.66 0.995068
Target:  5'- aGGGCGGccaccucagcGGCCAcuauGGGauuuaUCUCCUCCa -3'
miRNA:   3'- gUCCGCU----------UCGGUuuu-UUC-----GGAGGAGG- -5'
3897 3' -51.3 NC_001650.1 + 130333 0.66 0.995068
Target:  5'- gAGGaGAaccugccccaGGCCAAcguGAGCauCUCCUCCa -3'
miRNA:   3'- gUCCgCU----------UCGGUUuu-UUCG--GAGGAGG- -5'
3897 3' -51.3 NC_001650.1 + 116135 0.66 0.995068
Target:  5'- cCAGGCucaaccuGGUCAAGAAcGCCaucUUCUCCa -3'
miRNA:   3'- -GUCCGcu-----UCGGUUUUUuCGG---AGGAGG- -5'
3897 3' -51.3 NC_001650.1 + 94141 0.66 0.995068
Target:  5'- aCAGGCGAGGaguCCAccAAGGUCaCCUaCCu -3'
miRNA:   3'- -GUCCGCUUC---GGUuuUUUCGGaGGA-GG- -5'
3897 3' -51.3 NC_001650.1 + 124694 0.66 0.995068
Target:  5'- gGGGUGcAAGCCucgguguAGAAAGUUUacaaCCUCCa -3'
miRNA:   3'- gUCCGC-UUCGGu------UUUUUCGGA----GGAGG- -5'
3897 3' -51.3 NC_001650.1 + 180577 0.66 0.994993
Target:  5'- aAGGCuGAAGCCAAccuaacAAcucccauccuuacAGGCUUCCcCCg -3'
miRNA:   3'- gUCCG-CUUCGGUU------UU-------------UUCGGAGGaGG- -5'
3897 3' -51.3 NC_001650.1 + 13870 0.66 0.994993
Target:  5'- aAGGCuGAAGCCAAccuaacAAcucccauccuuacAGGCUUCCcCCg -3'
miRNA:   3'- gUCCG-CUUCGGUU------UU-------------UUCGGAGGaGG- -5'
3897 3' -51.3 NC_001650.1 + 153758 0.66 0.994272
Target:  5'- uGGGCGAgaccccccugAGCCGccccaGAAAGGCCaCCgucucgCCg -3'
miRNA:   3'- gUCCGCU----------UCGGU-----UUUUUCGGaGGa-----GG- -5'
3897 3' -51.3 NC_001650.1 + 118285 0.66 0.994272
Target:  5'- -cGuCGuAGGCCAGAAAGGCCgCC-CCg -3'
miRNA:   3'- guCcGC-UUCGGUUUUUUCGGaGGaGG- -5'
3897 3' -51.3 NC_001650.1 + 69864 0.66 0.994272
Target:  5'- gGGGCcuaAGGCCAA--GAGCCUCaagCUg -3'
miRNA:   3'- gUCCGc--UUCGGUUuuUUCGGAGga-GG- -5'
3897 3' -51.3 NC_001650.1 + 57813 0.66 0.994272
Target:  5'- -cGGCGggGgCGcGAAGGGCaUCgCUCCg -3'
miRNA:   3'- guCCGCuuCgGU-UUUUUCGgAG-GAGG- -5'
3897 3' -51.3 NC_001650.1 + 178949 0.66 0.994272
Target:  5'- cCAGGCauGggGauCCAAGAuGGCCgCCUgCCa -3'
miRNA:   3'- -GUCCG--CuuC--GGUUUUuUCGGaGGA-GG- -5'
3897 3' -51.3 NC_001650.1 + 57931 0.66 0.994272
Target:  5'- aGGGCGcGGCCGGGGGcGGCaC-CCUCa -3'
miRNA:   3'- gUCCGCuUCGGUUUUU-UCG-GaGGAGg -5'
3897 3' -51.3 NC_001650.1 + 58171 0.66 0.994272
Target:  5'- -uGGCGAuggcuGCCGugGGAGGGUCUUCgCCg -3'
miRNA:   3'- guCCGCUu----CGGU--UUUUUCGGAGGaGG- -5'
3897 3' -51.3 NC_001650.1 + 103738 0.66 0.994272
Target:  5'- gAGGUGAAcucccuGCCcgcGAcGGCCUCCcCCa -3'
miRNA:   3'- gUCCGCUU------CGGuu-UUuUCGGAGGaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.