miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3897 5' -56.7 NC_001650.1 + 76936 0.65 0.926457
Target:  5'- aGGGcgAGGAGGCUaUCaggcaggcgcauauGCUGGCCCu -3'
miRNA:   3'- gCCCa-UUCUCCGG-AGgau-----------CGACUGGG- -5'
3897 5' -56.7 NC_001650.1 + 38533 0.66 0.922732
Target:  5'- gCGGGcgGGGAGcUCUCCUgccAGCUGuACCa -3'
miRNA:   3'- -GCCCa-UUCUCcGGAGGA---UCGAC-UGGg -5'
3897 5' -56.7 NC_001650.1 + 88731 0.66 0.922732
Target:  5'- gGGGaGGGGGaGCCUCUUGG---GCCCg -3'
miRNA:   3'- gCCCaUUCUC-CGGAGGAUCgacUGGG- -5'
3897 5' -56.7 NC_001650.1 + 37620 0.66 0.922732
Target:  5'- aGGGUGgaGGAGGUgUgCgcGCgggGGCCCc -3'
miRNA:   3'- gCCCAU--UCUCCGgAgGauCGa--CUGGG- -5'
3897 5' -56.7 NC_001650.1 + 157248 0.66 0.922732
Target:  5'- aGGGaagaGAGaAGGCCgcccCCUcggGGCUGuaGCCCa -3'
miRNA:   3'- gCCCa---UUC-UCCGGa---GGA---UCGAC--UGGG- -5'
3897 5' -56.7 NC_001650.1 + 158383 0.66 0.911469
Target:  5'- uGuGGUGGG-GGCCUCgacGCUGACUg -3'
miRNA:   3'- gC-CCAUUCuCCGGAGgauCGACUGGg -5'
3897 5' -56.7 NC_001650.1 + 67094 0.66 0.911469
Target:  5'- aCGGGggcGAcGUCUCCaAGCUGcCCCc -3'
miRNA:   3'- -GCCCauuCUcCGGAGGaUCGACuGGG- -5'
3897 5' -56.7 NC_001650.1 + 30204 0.66 0.911469
Target:  5'- gGGGUccuGAcGGaCCUCCUcucgGGC-GACCCc -3'
miRNA:   3'- gCCCAuu-CU-CC-GGAGGA----UCGaCUGGG- -5'
3897 5' -56.7 NC_001650.1 + 26551 0.66 0.911469
Target:  5'- gCGGGgggcGAGGUgUUCUcGCUGcCCCu -3'
miRNA:   3'- -GCCCauu-CUCCGgAGGAuCGACuGGG- -5'
3897 5' -56.7 NC_001650.1 + 126897 0.66 0.911469
Target:  5'- gCGGGUGGGGGuGCCaCCggcGCUacGGCCg -3'
miRNA:   3'- -GCCCAUUCUC-CGGaGGau-CGA--CUGGg -5'
3897 5' -56.7 NC_001650.1 + 105063 0.66 0.910882
Target:  5'- uGGGUAuacuuauuauccaGGAGGCCagagaggacgcUCaggGGaCUGGCCCu -3'
miRNA:   3'- gCCCAU-------------UCUCCGG-----------AGga-UC-GACUGGG- -5'
3897 5' -56.7 NC_001650.1 + 76888 0.66 0.905495
Target:  5'- uGGGgcugcccccGGGGGUCUCCgUGGggGACCUg -3'
miRNA:   3'- gCCCau-------UCUCCGGAGG-AUCgaCUGGG- -5'
3897 5' -56.7 NC_001650.1 + 93749 0.66 0.904885
Target:  5'- aGGGUcugcuGAGGCCcaucuaccacgagUCCUucaAGCUGugCUc -3'
miRNA:   3'- gCCCAuu---CUCCGG-------------AGGA---UCGACugGG- -5'
3897 5' -56.7 NC_001650.1 + 159240 0.66 0.904273
Target:  5'- cCGGGgaGGGGGCC-CCgaaccccaggugGGUgcccugGGCCCa -3'
miRNA:   3'- -GCCCauUCUCCGGaGGa-----------UCGa-----CUGGG- -5'
3897 5' -56.7 NC_001650.1 + 98497 0.66 0.899295
Target:  5'- uGGG-AGGAGGCgUgCUcaUUGGCCCg -3'
miRNA:   3'- gCCCaUUCUCCGgAgGAucGACUGGG- -5'
3897 5' -56.7 NC_001650.1 + 147744 0.66 0.899295
Target:  5'- -uGGUGGGGGGUg-CCUGGUuuuggggGACCCg -3'
miRNA:   3'- gcCCAUUCUCCGgaGGAUCGa------CUGGG- -5'
3897 5' -56.7 NC_001650.1 + 163525 0.66 0.899295
Target:  5'- aGGGUAGG-GGCggCCcGGCaccaGACCCc -3'
miRNA:   3'- gCCCAUUCuCCGgaGGaUCGa---CUGGG- -5'
3897 5' -56.7 NC_001650.1 + 161403 0.66 0.899295
Target:  5'- uCGGGcAGGAGGCUgguguaggUCUUgAGCcccaUGACCCc -3'
miRNA:   3'- -GCCCaUUCUCCGG--------AGGA-UCG----ACUGGG- -5'
3897 5' -56.7 NC_001650.1 + 126831 0.66 0.899295
Target:  5'- gGGGUGGGGGaGCCgcaggCCccacaGGUcacagUGACCCa -3'
miRNA:   3'- gCCCAUUCUC-CGGa----GGa----UCG-----ACUGGG- -5'
3897 5' -56.7 NC_001650.1 + 97867 0.66 0.899295
Target:  5'- gGGGUAGGGGGuggucuucaCCUCg-GGCUGAggcucucgcCCCu -3'
miRNA:   3'- gCCCAUUCUCC---------GGAGgaUCGACU---------GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.