miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3898 3' -54.4 NC_001650.1 + 103482 0.66 0.96134
Target:  5'- gGCCGCGCAGgaaAGG---GUGCACa- -3'
miRNA:   3'- -CGGCGCGUCgagUCCaaaUACGUGga -5'
3898 3' -54.4 NC_001650.1 + 51602 0.66 0.957696
Target:  5'- gGCCGCcuGCAGgUUGGGggccaGCGCCUc -3'
miRNA:   3'- -CGGCG--CGUCgAGUCCaaauaCGUGGA- -5'
3898 3' -54.4 NC_001650.1 + 61508 0.66 0.949721
Target:  5'- gGCCGC-CuGCaUCGGGggcGUGUACCUu -3'
miRNA:   3'- -CGGCGcGuCG-AGUCCaaaUACGUGGA- -5'
3898 3' -54.4 NC_001650.1 + 116281 0.66 0.949721
Target:  5'- aGCCaGUGCAGCUUGGcGgcca-GCGCCUc -3'
miRNA:   3'- -CGG-CGCGUCGAGUC-CaaauaCGUGGA- -5'
3898 3' -54.4 NC_001650.1 + 65651 0.66 0.949721
Target:  5'- gGCCuCGCAGCU--GGUgagcUGCGCCa -3'
miRNA:   3'- -CGGcGCGUCGAguCCAaau-ACGUGGa -5'
3898 3' -54.4 NC_001650.1 + 169059 0.66 0.949298
Target:  5'- cGCCGCGCccguGGCgCGGcgccauguuguguGUUUGUGCACa- -3'
miRNA:   3'- -CGGCGCG----UCGaGUC-------------CAAAUACGUGga -5'
3898 3' -54.4 NC_001650.1 + 2352 0.66 0.949298
Target:  5'- cGCCGCGCccguGGCgCGGcgccauguuguguGUUUGUGCACa- -3'
miRNA:   3'- -CGGCGCG----UCGaGUC-------------CAAAUACGUGga -5'
3898 3' -54.4 NC_001650.1 + 162596 0.67 0.940804
Target:  5'- cCCGCggGCAGCUCAGagacg-GCGCCc -3'
miRNA:   3'- cGGCG--CGUCGAGUCcaaauaCGUGGa -5'
3898 3' -54.4 NC_001650.1 + 156469 0.67 0.940804
Target:  5'- gGCCGCGguGCccacgUAGGUgg--GCACg- -3'
miRNA:   3'- -CGGCGCguCGa----GUCCAaauaCGUGga -5'
3898 3' -54.4 NC_001650.1 + 48159 0.67 0.935985
Target:  5'- gGCCGCGgGGCUgGGGgagUAcucucUGCcCCUc -3'
miRNA:   3'- -CGGCGCgUCGAgUCCaa-AU-----ACGuGGA- -5'
3898 3' -54.4 NC_001650.1 + 147915 0.67 0.932977
Target:  5'- aCCGCGCgcaugaagcccgcugAGCUguucuUGGGcUUGUGCACCUc -3'
miRNA:   3'- cGGCGCG---------------UCGA-----GUCCaAAUACGUGGA- -5'
3898 3' -54.4 NC_001650.1 + 108845 0.67 0.930404
Target:  5'- gGCCGUGCAGCUgcccaccCAGGU-----CACCg -3'
miRNA:   3'- -CGGCGCGUCGA-------GUCCAaauacGUGGa -5'
3898 3' -54.4 NC_001650.1 + 49188 0.67 0.925619
Target:  5'- gGCCGCGCgcuGGCcgAGGgcgagcUGCGCCUg -3'
miRNA:   3'- -CGGCGCG---UCGagUCCaaau--ACGUGGA- -5'
3898 3' -54.4 NC_001650.1 + 53342 0.67 0.925619
Target:  5'- gGCCGgGCAGaUCcuGUgagAUGCGCCg -3'
miRNA:   3'- -CGGCgCGUCgAGucCAaa-UACGUGGa -5'
3898 3' -54.4 NC_001650.1 + 155739 0.67 0.92007
Target:  5'- uGCaGCGCGGC-CAGGggcucgGUGCAgCCg -3'
miRNA:   3'- -CGgCGCGUCGaGUCCaaa---UACGU-GGa -5'
3898 3' -54.4 NC_001650.1 + 46373 0.67 0.92007
Target:  5'- cGCCGCauCGGCcgCGGGgcaccagAUGCGCCg -3'
miRNA:   3'- -CGGCGc-GUCGa-GUCCaaa----UACGUGGa -5'
3898 3' -54.4 NC_001650.1 + 28930 0.68 0.901973
Target:  5'- -aCGCGCAGCgUCGGcugag-GCACCUg -3'
miRNA:   3'- cgGCGCGUCG-AGUCcaaauaCGUGGA- -5'
3898 3' -54.4 NC_001650.1 + 158305 0.68 0.901973
Target:  5'- gGCCgGgGCAGCaUCAGGUagAUGgaCACCg -3'
miRNA:   3'- -CGG-CgCGUCG-AGUCCAaaUAC--GUGGa -5'
3898 3' -54.4 NC_001650.1 + 26730 0.68 0.901973
Target:  5'- cGCCGgGCccGGCcuggaGGGgcUGUGCGCCg -3'
miRNA:   3'- -CGGCgCG--UCGag---UCCaaAUACGUGGa -5'
3898 3' -54.4 NC_001650.1 + 176152 0.68 0.888718
Target:  5'- -aCuaGCAGCUCAGGUg---GUACCc -3'
miRNA:   3'- cgGcgCGUCGAGUCCAaauaCGUGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.