miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3898 5' -47 NC_001650.1 + 65431 0.66 0.999971
Target:  5'- cCAAGcgcAUGUAUGACaccUACGUGCUGcGCa -3'
miRNA:   3'- -GUUC---UACAUGUUG---AUGCGCGACuUGc -5'
3898 5' -47 NC_001650.1 + 36698 0.66 0.999961
Target:  5'- cUAGGGUGUGCAGCcgcaGCGUGCcgccACGg -3'
miRNA:   3'- -GUUCUACAUGUUGa---UGCGCGacu-UGC- -5'
3898 5' -47 NC_001650.1 + 70367 0.66 0.999961
Target:  5'- cCGAGAUGg--AGCUGgcUGUGCUGGACc -3'
miRNA:   3'- -GUUCUACaugUUGAU--GCGCGACUUGc -5'
3898 5' -47 NC_001650.1 + 147206 0.66 0.999961
Target:  5'- cCGAGAccgUGgcCAGCU-CGCGcCUGAugGc -3'
miRNA:   3'- -GUUCU---ACauGUUGAuGCGC-GACUugC- -5'
3898 5' -47 NC_001650.1 + 27042 0.66 0.999961
Target:  5'- -uGGAUGUGCAGCggggcAUGaCGCUGGuGCa -3'
miRNA:   3'- guUCUACAUGUUGa----UGC-GCGACU-UGc -5'
3898 5' -47 NC_001650.1 + 59230 0.66 0.999948
Target:  5'- gGAGAcccUGgcCAACUGCGCcuGCagGGACGa -3'
miRNA:   3'- gUUCU---ACauGUUGAUGCG--CGa-CUUGC- -5'
3898 5' -47 NC_001650.1 + 48213 0.66 0.999948
Target:  5'- gGAGAUGaGCAGgaACGgGCUGcACa -3'
miRNA:   3'- gUUCUACaUGUUgaUGCgCGACuUGc -5'
3898 5' -47 NC_001650.1 + 128213 0.66 0.999948
Target:  5'- cCGGGAga-GCAACUccuucgAgGCGCUGAugGg -3'
miRNA:   3'- -GUUCUacaUGUUGA------UgCGCGACUugC- -5'
3898 5' -47 NC_001650.1 + 76817 0.66 0.999948
Target:  5'- gAAGggGUGCAGCguCGCGagcGAGCGg -3'
miRNA:   3'- gUUCuaCAUGUUGauGCGCga-CUUGC- -5'
3898 5' -47 NC_001650.1 + 131381 0.67 0.999909
Target:  5'- cCAAGAggcuggggGUGgAGCUGCGggacaUGCUGGACa -3'
miRNA:   3'- -GUUCUa-------CAUgUUGAUGC-----GCGACUUGc -5'
3898 5' -47 NC_001650.1 + 28671 0.67 0.999881
Target:  5'- cCAAGggGgACAGCUGCGUGgUaAGCGg -3'
miRNA:   3'- -GUUCuaCaUGUUGAUGCGCgAcUUGC- -5'
3898 5' -47 NC_001650.1 + 65329 0.67 0.999881
Target:  5'- aCAGGuuccUGUGgGACaACGCGCgGGACa -3'
miRNA:   3'- -GUUCu---ACAUgUUGaUGCGCGaCUUGc -5'
3898 5' -47 NC_001650.1 + 116063 0.67 0.999846
Target:  5'- cCAAGGUGcACGGCccCGgGCUGGugGc -3'
miRNA:   3'- -GUUCUACaUGUUGauGCgCGACUugC- -5'
3898 5' -47 NC_001650.1 + 34725 0.67 0.999801
Target:  5'- aCAAGAUGga-GGCUACGaCGacgUGGACGu -3'
miRNA:   3'- -GUUCUACaugUUGAUGC-GCg--ACUUGC- -5'
3898 5' -47 NC_001650.1 + 69212 0.67 0.999801
Target:  5'- -----cGUGCAACUcguGCGCGC-GGGCGc -3'
miRNA:   3'- guucuaCAUGUUGA---UGCGCGaCUUGC- -5'
3898 5' -47 NC_001650.1 + 144211 0.68 0.999677
Target:  5'- ----cUGUACAGCUACacgGUGCUGAGgGc -3'
miRNA:   3'- guucuACAUGUUGAUG---CGCGACUUgC- -5'
3898 5' -47 NC_001650.1 + 132012 0.68 0.999677
Target:  5'- uCAAGAgcccccUGCAccugcuCUACGCGCUGGccGCGg -3'
miRNA:   3'- -GUUCUac----AUGUu-----GAUGCGCGACU--UGC- -5'
3898 5' -47 NC_001650.1 + 36373 0.68 0.99949
Target:  5'- -cAGGUGUGCAGggACaaGCUGAGCc -3'
miRNA:   3'- guUCUACAUGUUgaUGcgCGACUUGc -5'
3898 5' -47 NC_001650.1 + 109085 0.68 0.999215
Target:  5'- -----cGUGCGGagcgACGUGCUGAGCGu -3'
miRNA:   3'- guucuaCAUGUUga--UGCGCGACUUGC- -5'
3898 5' -47 NC_001650.1 + 116223 0.69 0.999035
Target:  5'- gGAGugccUGUACGAgUGCGCcuccuucgggagGCUGGACGu -3'
miRNA:   3'- gUUCu---ACAUGUUgAUGCG------------CGACUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.