miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3902 3' -55.4 NC_001650.1 + 51008 0.68 0.905832
Target:  5'- gGGGCGCGGGCgCGGCGgcCcccucucagaucaagGUGGgcGUGAc -3'
miRNA:   3'- -CCUGCGCCCG-GUCGU--G---------------CACUuuCACU- -5'
3902 3' -55.4 NC_001650.1 + 83651 0.68 0.90337
Target:  5'- gGGACGC-GGCCGGCGgGUGcgacGAGg-- -3'
miRNA:   3'- -CCUGCGcCCGGUCGUgCACu---UUCacu -5'
3902 3' -55.4 NC_001650.1 + 106109 0.68 0.897056
Target:  5'- uGGGCGCucGGGCCuGGCcACaagGggGGUGGu -3'
miRNA:   3'- -CCUGCG--CCCGG-UCG-UGca-CuuUCACU- -5'
3902 3' -55.4 NC_001650.1 + 84808 0.68 0.896412
Target:  5'- cGGugGUGGGCuUGGCAgaugauaUGUGGAgcAGUGGa -3'
miRNA:   3'- -CCugCGCCCG-GUCGU-------GCACUU--UCACU- -5'
3902 3' -55.4 NC_001650.1 + 127573 0.68 0.890517
Target:  5'- gGGGCGaccgcccaGGGCCAGgGgGUGGAcuuuagcgaGGUGGa -3'
miRNA:   3'- -CCUGCg-------CCCGGUCgUgCACUU---------UCACU- -5'
3902 3' -55.4 NC_001650.1 + 121893 0.68 0.890517
Target:  5'- cGACGCGGaCUAcGCGC-UGGAGGUGGu -3'
miRNA:   3'- cCUGCGCCcGGU-CGUGcACUUUCACU- -5'
3902 3' -55.4 NC_001650.1 + 154475 0.68 0.890517
Target:  5'- gGGGCGCGGccgccuggggcGCUAGCGCGaacucguccugcUGugGGUGAc -3'
miRNA:   3'- -CCUGCGCC-----------CGGUCGUGC------------ACuuUCACU- -5'
3902 3' -55.4 NC_001650.1 + 124221 0.68 0.890517
Target:  5'- aGAgGUGGGCCagaAGCugGUGAaGAG-GAg -3'
miRNA:   3'- cCUgCGCCCGG---UCGugCACU-UUCaCU- -5'
3902 3' -55.4 NC_001650.1 + 28379 0.68 0.888512
Target:  5'- uGGACGCGGggucccuggaggacGCguGCGCGggcgGGGAGcUGAc -3'
miRNA:   3'- -CCUGCGCC--------------CGguCGUGCa---CUUUC-ACU- -5'
3902 3' -55.4 NC_001650.1 + 22440 0.68 0.883757
Target:  5'- cGGGCGCgcccacccuccuGGGCUu---CGUGAGGGUGAu -3'
miRNA:   3'- -CCUGCG------------CCCGGucguGCACUUUCACU- -5'
3902 3' -55.4 NC_001650.1 + 131907 0.68 0.877487
Target:  5'- aGGACggGCGGGCCAGgGCGggcuuccugcuGUGGg -3'
miRNA:   3'- -CCUG--CGCCCGGUCgUGCacuuu------CACU- -5'
3902 3' -55.4 NC_001650.1 + 119169 0.68 0.87678
Target:  5'- uGGccCGCaggaGGGCCAGCuCGUGAAGGa-- -3'
miRNA:   3'- -CCu-GCG----CCCGGUCGuGCACUUUCacu -5'
3902 3' -55.4 NC_001650.1 + 66723 0.68 0.876071
Target:  5'- aGGCGgucaGGGCCaguaaccAGCugGUGAcGGUGGg -3'
miRNA:   3'- cCUGCg---CCCGG-------UCGugCACUuUCACU- -5'
3902 3' -55.4 NC_001650.1 + 35583 0.68 0.874645
Target:  5'- -uAUGCGGGguCCGGCGCGUgcgagcgccuggggGAGGGUGGu -3'
miRNA:   3'- ccUGCGCCC--GGUCGUGCA--------------CUUUCACU- -5'
3902 3' -55.4 NC_001650.1 + 82601 0.68 0.86959
Target:  5'- --uCGCGGGCCugugcaGGUGCGUGAGgucGGUGu -3'
miRNA:   3'- ccuGCGCCCGG------UCGUGCACUU---UCACu -5'
3902 3' -55.4 NC_001650.1 + 170216 0.68 0.86959
Target:  5'- uGGGCggGCGGGCgGGCAgGUGggGa--- -3'
miRNA:   3'- -CCUG--CGCCCGgUCGUgCACuuUcacu -5'
3902 3' -55.4 NC_001650.1 + 26920 0.68 0.86959
Target:  5'- uGGGCGaGGGCgGGgGCGgGGAGGUGc -3'
miRNA:   3'- -CCUGCgCCCGgUCgUGCaCUUUCACu -5'
3902 3' -55.4 NC_001650.1 + 3509 0.68 0.86959
Target:  5'- uGGGCggGCGGGCgGGCAgGUGggGa--- -3'
miRNA:   3'- -CCUG--CGCCCGgUCGUgCACuuUcacu -5'
3902 3' -55.4 NC_001650.1 + 98620 0.68 0.86959
Target:  5'- cGGACaGCGGGUCAuaguGCACuGUGuu-GUGGg -3'
miRNA:   3'- -CCUG-CGCCCGGU----CGUG-CACuuuCACU- -5'
3902 3' -55.4 NC_001650.1 + 51255 0.68 0.86959
Target:  5'- -cGCGCGGGCgAGCGCGgaccaccGGAGGg-- -3'
miRNA:   3'- ccUGCGCCCGgUCGUGCa------CUUUCacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.