miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3902 5' -58.4 NC_001650.1 + 73931 0.66 0.859128
Target:  5'- gGAUGUgUUUCugGAGCa-GCCCUgCCUg -3'
miRNA:   3'- -CUGCAgGAAGugCUCGacCGGGA-GGA- -5'
3902 5' -58.4 NC_001650.1 + 134160 0.66 0.85153
Target:  5'- gGGCGaCC---GCGGGC-GGCCCUCCc -3'
miRNA:   3'- -CUGCaGGaagUGCUCGaCCGGGAGGa -5'
3902 5' -58.4 NC_001650.1 + 122943 0.66 0.843742
Target:  5'- cGGgGUCCUggcggaccUCGCGcGGCUGgagcaggccaccGCCCUCCa -3'
miRNA:   3'- -CUgCAGGA--------AGUGC-UCGAC------------CGGGAGGa -5'
3902 5' -58.4 NC_001650.1 + 112951 0.66 0.827622
Target:  5'- cACG-CCUcCACGGGCUGGUacaggggguUCUCCg -3'
miRNA:   3'- cUGCaGGAaGUGCUCGACCG---------GGAGGa -5'
3902 5' -58.4 NC_001650.1 + 73224 0.66 0.822652
Target:  5'- uGACGcggucaccuucgagaUCCacCACGAGCUGGCCaC-CCUc -3'
miRNA:   3'- -CUGC---------------AGGaaGUGCUCGACCGG-GaGGA- -5'
3902 5' -58.4 NC_001650.1 + 111495 0.67 0.810825
Target:  5'- aGCGUCUgcccCACcAGCuUGGCCCUCUc -3'
miRNA:   3'- cUGCAGGaa--GUGcUCG-ACCGGGAGGa -5'
3902 5' -58.4 NC_001650.1 + 50530 0.68 0.756979
Target:  5'- gGGCaaCCUgaGCGAGgUGGCCUUCCUg -3'
miRNA:   3'- -CUGcaGGAagUGCUCgACCGGGAGGA- -5'
3902 5' -58.4 NC_001650.1 + 98028 0.68 0.747588
Target:  5'- uGACGU---UgAUGGGCUGGCCCUCg- -3'
miRNA:   3'- -CUGCAggaAgUGCUCGACCGGGAGga -5'
3902 5' -58.4 NC_001650.1 + 37348 0.68 0.747588
Target:  5'- cGGgGUUCUgcgACGAGCUGGCCgCUCa- -3'
miRNA:   3'- -CUgCAGGAag-UGCUCGACCGG-GAGga -5'
3902 5' -58.4 NC_001650.1 + 37731 0.68 0.747588
Target:  5'- -cUGUCCUUCuccacCGAGCUgagcaGGCCCaucUCCUa -3'
miRNA:   3'- cuGCAGGAAGu----GCUCGA-----CCGGG---AGGA- -5'
3902 5' -58.4 NC_001650.1 + 105094 0.68 0.7381
Target:  5'- gGACG-C--UCAgGGGaCUGGCCCUCCUc -3'
miRNA:   3'- -CUGCaGgaAGUgCUC-GACCGGGAGGA- -5'
3902 5' -58.4 NC_001650.1 + 28289 0.7 0.619788
Target:  5'- gGACGUCCUUCgcggACGAGCa-GUUCUCCa -3'
miRNA:   3'- -CUGCAGGAAG----UGCUCGacCGGGAGGa -5'
3902 5' -58.4 NC_001650.1 + 55927 0.71 0.550464
Target:  5'- -cUGUCCUUgACccccGGCUGGCUCUCCa -3'
miRNA:   3'- cuGCAGGAAgUGc---UCGACCGGGAGGa -5'
3902 5' -58.4 NC_001650.1 + 56564 0.72 0.511882
Target:  5'- aGGCGUCCacgaUCAgGGGCaGGCUCUCCc -3'
miRNA:   3'- -CUGCAGGa---AGUgCUCGaCCGGGAGGa -5'
3902 5' -58.4 NC_001650.1 + 108909 0.73 0.474465
Target:  5'- uGCGUCCacuaCGCgGAGCUGGCCUUCUc -3'
miRNA:   3'- cUGCAGGaa--GUG-CUCGACCGGGAGGa -5'
3902 5' -58.4 NC_001650.1 + 119196 0.73 0.433203
Target:  5'- gGACGUCaaagaggcaccucacUUUCACGuGCUGGCCCgcgUCCUc -3'
miRNA:   3'- -CUGCAG---------------GAAGUGCuCGACCGGG---AGGA- -5'
3902 5' -58.4 NC_001650.1 + 65041 1.07 0.002585
Target:  5'- uGACGUCCUUCACGAGCUGGCCCUCCUg -3'
miRNA:   3'- -CUGCAGGAAGUGCUCGACCGGGAGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.