miRNA display CGI


Results 1 - 20 of 36 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3905 3' -53.1 NC_001650.1 + 97103 0.66 0.978822
Target:  5'- -aGGuGcucGAG-CAGGGcAUCCCCCCCa -3'
miRNA:   3'- aaCCuC---UUCaGUUUCaUAGGGGGGGa -5'
3905 3' -53.1 NC_001650.1 + 166780 0.66 0.973786
Target:  5'- -aGGAGAGGggCccGGgaaaCCCCCCCUc -3'
miRNA:   3'- aaCCUCUUCa-GuuUCaua-GGGGGGGA- -5'
3905 3' -53.1 NC_001650.1 + 73 0.66 0.973786
Target:  5'- -aGGAGAGGggCccGGgaaaCCCCCCCUc -3'
miRNA:   3'- aaCCUCUUCa-GuuUCaua-GGGGGGGA- -5'
3905 3' -53.1 NC_001650.1 + 58544 0.66 0.973786
Target:  5'- cUGGaAGA--UgGGGGUGUCgCCCCCCUu -3'
miRNA:   3'- aACC-UCUucAgUUUCAUAG-GGGGGGA- -5'
3905 3' -53.1 NC_001650.1 + 125753 0.66 0.972118
Target:  5'- -gGGAGAGccuggacuggauccuGUCAAAGUucaCCUCCCUg -3'
miRNA:   3'- aaCCUCUU---------------CAGUUUCAuagGGGGGGA- -5'
3905 3' -53.1 NC_001650.1 + 123004 0.67 0.964682
Target:  5'- -gGGcGGggGUCAGGcaa-CCCCCCCa -3'
miRNA:   3'- aaCC-UCuuCAGUUUcauaGGGGGGGa -5'
3905 3' -53.1 NC_001650.1 + 126528 0.67 0.964682
Target:  5'- --cGAGGAGuUCGAGGg--CCCCCUCUu -3'
miRNA:   3'- aacCUCUUC-AGUUUCauaGGGGGGGA- -5'
3905 3' -53.1 NC_001650.1 + 37623 0.67 0.961208
Target:  5'- gUGGAGGAGgugugcgcgCGGGGg--CCCCCCg- -3'
miRNA:   3'- aACCUCUUCa--------GUUUCauaGGGGGGga -5'
3905 3' -53.1 NC_001650.1 + 54549 0.67 0.961208
Target:  5'- -gGGAG-GGUCGAggacagGGUGgagCCCUCCCUc -3'
miRNA:   3'- aaCCUCuUCAGUU------UCAUa--GGGGGGGA- -5'
3905 3' -53.1 NC_001650.1 + 142184 0.67 0.961208
Target:  5'- -aGGuuGGAGUCGGGG-GUCCCCCUUc -3'
miRNA:   3'- aaCCu-CUUCAGUUUCaUAGGGGGGGa -5'
3905 3' -53.1 NC_001650.1 + 992 0.67 0.957504
Target:  5'- gUGGGGaAAGUCAAaaaaaaauaauAGUAccgCaCCCCCCa -3'
miRNA:   3'- aACCUC-UUCAGUU-----------UCAUa--G-GGGGGGa -5'
3905 3' -53.1 NC_001650.1 + 131103 0.67 0.957504
Target:  5'- -gGGGGAGG-CGAGGggaGUCCCUCCg- -3'
miRNA:   3'- aaCCUCUUCaGUUUCa--UAGGGGGGga -5'
3905 3' -53.1 NC_001650.1 + 146708 0.67 0.957504
Target:  5'- -gGGAGAGGUCGcgggGAGUucaccucgggGUCagCCCCCg -3'
miRNA:   3'- aaCCUCUUCAGU----UUCA----------UAGg-GGGGGa -5'
3905 3' -53.1 NC_001650.1 + 162521 0.67 0.957504
Target:  5'- aUGGGGGcgacgucccuGGaCAGGGUGcagggCCCCCCCg -3'
miRNA:   3'- aACCUCU----------UCaGUUUCAUa----GGGGGGGa -5'
3905 3' -53.1 NC_001650.1 + 18444 0.67 0.953158
Target:  5'- gUGGGGggGUguAGGagaUGUCccacaggCCCCCCUa -3'
miRNA:   3'- aACCUCuuCAguUUC---AUAG-------GGGGGGA- -5'
3905 3' -53.1 NC_001650.1 + 57432 0.67 0.949386
Target:  5'- -cGGAGAGuGUCGucGccccaucccUCCCCCCCa -3'
miRNA:   3'- aaCCUCUU-CAGUuuCau-------AGGGGGGGa -5'
3905 3' -53.1 NC_001650.1 + 36449 0.68 0.940299
Target:  5'- -aGGAGGAcGUCuccuacAAGgagAUCCCCCaCCUg -3'
miRNA:   3'- aaCCUCUU-CAGu-----UUCa--UAGGGGG-GGA- -5'
3905 3' -53.1 NC_001650.1 + 154004 0.68 0.939819
Target:  5'- -gGGAGggGUCGcccgaGAGgagGUCCgucaggaCCCCCa -3'
miRNA:   3'- aaCCUCuuCAGU-----UUCa--UAGG-------GGGGGa -5'
3905 3' -53.1 NC_001650.1 + 145342 0.68 0.935385
Target:  5'- aUGGAGAGGccugUAAAGUccuUCCCCUCUc -3'
miRNA:   3'- aACCUCUUCa---GUUUCAu--AGGGGGGGa -5'
3905 3' -53.1 NC_001650.1 + 20071 0.68 0.935385
Target:  5'- uUUGuGAGAuGUUAu-GUGUCCCCCCa- -3'
miRNA:   3'- -AAC-CUCUuCAGUuuCAUAGGGGGGga -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.