miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3905 5' -61.1 NC_001650.1 + 108879 0.66 0.746797
Target:  5'- aGAGGAgggagagagauaCGuGCGCGCcuCGUCCgcGGCCg- -3'
miRNA:   3'- aCUCCU------------GC-CGCGCGu-GCAGG--UCGGag -5'
3905 5' -61.1 NC_001650.1 + 50298 0.66 0.746797
Target:  5'- gGGGaGACGGCgagcgcccaaaGCGCGCcucGUCCcucccggccccGGCCUCc -3'
miRNA:   3'- aCUC-CUGCCG-----------CGCGUG---CAGG-----------UCGGAG- -5'
3905 5' -61.1 NC_001650.1 + 75332 0.66 0.746797
Target:  5'- cGcAGG-CGGUgagGCGCGCGUCCuccauGcCCUCc -3'
miRNA:   3'- aC-UCCuGCCG---CGCGUGCAGGu----C-GGAG- -5'
3905 5' -61.1 NC_001650.1 + 61328 0.66 0.737478
Target:  5'- --uGGGUGGCGCGU-CGUCcCAGuCCUCu -3'
miRNA:   3'- acuCCUGCCGCGCGuGCAG-GUC-GGAG- -5'
3905 5' -61.1 NC_001650.1 + 125532 0.66 0.737478
Target:  5'- --uGGACaGGCucuGCGcCGCGUCCAGCgUg -3'
miRNA:   3'- acuCCUG-CCG---CGC-GUGCAGGUCGgAg -5'
3905 5' -61.1 NC_001650.1 + 78321 0.66 0.737478
Target:  5'- aGAGGACGGCaaGCugG-CCgagaucagggaGGCCa- -3'
miRNA:   3'- aCUCCUGCCGcgCGugCaGG-----------UCGGag -5'
3905 5' -61.1 NC_001650.1 + 162162 0.66 0.737478
Target:  5'- --cGGGCagcuuGGCGaGCGCGUCC-GCCUUg -3'
miRNA:   3'- acuCCUG-----CCGCgCGUGCAGGuCGGAG- -5'
3905 5' -61.1 NC_001650.1 + 88503 0.66 0.734666
Target:  5'- cGGGGACGccgggcgggaggaaGCGgGgGCG-CCGGUCUCu -3'
miRNA:   3'- aCUCCUGC--------------CGCgCgUGCaGGUCGGAG- -5'
3905 5' -61.1 NC_001650.1 + 22731 0.66 0.728075
Target:  5'- gGAGGGCGGUGCugucCACGUgCCAGag-Ca -3'
miRNA:   3'- aCUCCUGCCGCGc---GUGCA-GGUCggaG- -5'
3905 5' -61.1 NC_001650.1 + 26177 0.66 0.725239
Target:  5'- cGGGGccgccuGCGGCGUGUAC-UCUgugacccccagcguGGCCUCg -3'
miRNA:   3'- aCUCC------UGCCGCGCGUGcAGG--------------UCGGAG- -5'
3905 5' -61.1 NC_001650.1 + 89700 0.66 0.722396
Target:  5'- gGAGGGgGGCGCGCAgGUCaugugauagaagaugUcGCuCUCg -3'
miRNA:   3'- aCUCCUgCCGCGCGUgCAG---------------GuCG-GAG- -5'
3905 5' -61.1 NC_001650.1 + 136096 0.66 0.718596
Target:  5'- cGGGGGCGGC-Cu--UGUCCAGCCcCa -3'
miRNA:   3'- aCUCCUGCCGcGcguGCAGGUCGGaG- -5'
3905 5' -61.1 NC_001650.1 + 104044 0.66 0.718596
Target:  5'- cGuuGAUGGCGUGUGCGcugcCCGGCCg- -3'
miRNA:   3'- aCucCUGCCGCGCGUGCa---GGUCGGag -5'
3905 5' -61.1 NC_001650.1 + 159530 0.66 0.718596
Target:  5'- cUGuGGACcagGGCGCuggugaGCGCGUCCgaGGUCUUg -3'
miRNA:   3'- -ACuCCUG---CCGCG------CGUGCAGG--UCGGAG- -5'
3905 5' -61.1 NC_001650.1 + 106255 0.66 0.718596
Target:  5'- --uGGugGGCGCG-ACGgccCCucgguGCCUCg -3'
miRNA:   3'- acuCCugCCGCGCgUGCa--GGu----CGGAG- -5'
3905 5' -61.1 NC_001650.1 + 136310 0.66 0.718596
Target:  5'- gGAGGAgGGCGUGaacCGCGUCUugacagagaagaAGCCcaUCa -3'
miRNA:   3'- aCUCCUgCCGCGC---GUGCAGG------------UCGG--AG- -5'
3905 5' -61.1 NC_001650.1 + 106848 0.66 0.709049
Target:  5'- aGGGGugGGCGCugGgGUCgGGCC-Cg -3'
miRNA:   3'- aCUCCugCCGCGcgUgCAGgUCGGaG- -5'
3905 5' -61.1 NC_001650.1 + 102592 0.66 0.709049
Target:  5'- cGGGGgagcuggcccgcGCGGCGCGCGCccuGUgCGGCgacCUCg -3'
miRNA:   3'- aCUCC------------UGCCGCGCGUG---CAgGUCG---GAG- -5'
3905 5' -61.1 NC_001650.1 + 27223 0.66 0.709049
Target:  5'- gGGGGGCGG-GCG-AC-UgCAGCCUCa -3'
miRNA:   3'- aCUCCUGCCgCGCgUGcAgGUCGGAG- -5'
3905 5' -61.1 NC_001650.1 + 69154 0.66 0.699442
Target:  5'- aGGGGcGCGaGCGCcucCAgGUCCGGCCa- -3'
miRNA:   3'- aCUCC-UGC-CGCGc--GUgCAGGUCGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.