miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
391 3' -58.9 AC_000011.1 + 15576 0.66 0.43412
Target:  5'- cGCGugCgCGGGCAcuuccgcgcucCCUGGGgcgcccucaagGGCCGCg -3'
miRNA:   3'- -UGCugG-GCCCGUu----------GGACCU-----------UCGGUGg -5'
391 3' -58.9 AC_000011.1 + 5206 0.66 0.43412
Target:  5'- -gGACCCuGGCuGCgCUGGAcGcCCAUCg -3'
miRNA:   3'- ugCUGGGcCCGuUG-GACCUuC-GGUGG- -5'
391 3' -58.9 AC_000011.1 + 27117 0.66 0.424507
Target:  5'- cUGACCUagcucGGCuucgacACCUGGAccacuGCCGCCg -3'
miRNA:   3'- uGCUGGGc----CCGu-----UGGACCUu----CGGUGG- -5'
391 3' -58.9 AC_000011.1 + 11879 0.66 0.424507
Target:  5'- -gGACCUGcacuGGCAGCCc---AGCCGCCg -3'
miRNA:   3'- ugCUGGGC----CCGUUGGaccuUCGGUGG- -5'
391 3' -58.9 AC_000011.1 + 22629 0.66 0.415966
Target:  5'- gGCGAUCUGGGaaugcgcgugcacgaAGCCcugcaGGAAGCgGCCc -3'
miRNA:   3'- -UGCUGGGCCCg--------------UUGGa----CCUUCGgUGG- -5'
391 3' -58.9 AC_000011.1 + 17783 0.66 0.415023
Target:  5'- -gGACCCGGuGCcGCCcgccggcuccgUGGAGauGCCGCa -3'
miRNA:   3'- ugCUGGGCC-CGuUGG-----------ACCUU--CGGUGg -5'
391 3' -58.9 AC_000011.1 + 14738 0.66 0.415023
Target:  5'- cAUGAUCUGGaaGCcuuCCUGGAagGGCUGCCu -3'
miRNA:   3'- -UGCUGGGCC--CGuu-GGACCU--UCGGUGG- -5'
391 3' -58.9 AC_000011.1 + 35595 0.66 0.409395
Target:  5'- --uGCCUGGGCGauuuucuguccaguuAUCUGGAAGauauCACCg -3'
miRNA:   3'- ugcUGGGCCCGU---------------UGGACCUUCg---GUGG- -5'
391 3' -58.9 AC_000011.1 + 12171 0.66 0.40567
Target:  5'- cCGGCUCucGGCcauCCUGGAGGCCgugguGCCc -3'
miRNA:   3'- uGCUGGGc-CCGuu-GGACCUUCGG-----UGG- -5'
391 3' -58.9 AC_000011.1 + 22611 0.66 0.40567
Target:  5'- -aGGCCgaGGGCAAgCUGcGguGCCugCa -3'
miRNA:   3'- ugCUGGg-CCCGUUgGAC-CuuCGGugG- -5'
391 3' -58.9 AC_000011.1 + 17794 0.67 0.378422
Target:  5'- cACGGCCUGGuuGGCCaGGu--CCACCa -3'
miRNA:   3'- -UGCUGGGCCcgUUGGaCCuucGGUGG- -5'
391 3' -58.9 AC_000011.1 + 10969 0.67 0.378422
Target:  5'- cUGGCCUuggagaGGGCGaggggcuggcgcGCCUGGggGCgucguCGCCg -3'
miRNA:   3'- uGCUGGG------CCCGU------------UGGACCuuCG-----GUGG- -5'
391 3' -58.9 AC_000011.1 + 18552 0.67 0.378422
Target:  5'- cUGGCCgUGGGCGACaaccgcgugCUGGAcauGGCCAgCa -3'
miRNA:   3'- uGCUGG-GCCCGUUG---------GACCU---UCGGUgG- -5'
391 3' -58.9 AC_000011.1 + 18142 0.67 0.378422
Target:  5'- gGCGGugccCCCGGGUcGCgCgcgGGccacGGCCACCg -3'
miRNA:   3'- -UGCU----GGGCCCGuUG-Ga--CCu---UCGGUGG- -5'
391 3' -58.9 AC_000011.1 + 3102 0.67 0.378422
Target:  5'- uCGaACUCGGGCcagggcuugcgAGCaugGGAAGCCACa -3'
miRNA:   3'- uGC-UGGGCCCG-----------UUGga-CCUUCGGUGg -5'
391 3' -58.9 AC_000011.1 + 35108 0.67 0.360952
Target:  5'- gAUGugCgCGuggaGGCuuugCUGGAAGCCACCg -3'
miRNA:   3'- -UGCugG-GC----CCGuug-GACCUUCGGUGG- -5'
391 3' -58.9 AC_000011.1 + 3924 0.67 0.360952
Target:  5'- cGCGGCCCGcGUcugcuCCUGcagcuGAGCCACCu -3'
miRNA:   3'- -UGCUGGGCcCGuu---GGACc----UUCGGUGG- -5'
391 3' -58.9 AC_000011.1 + 25354 0.67 0.355822
Target:  5'- uCGGCCUgcgucaucacccaggGGGCGAuCCUGGcccaauugcAAGCCAUCc -3'
miRNA:   3'- uGCUGGG---------------CCCGUU-GGACC---------UUCGGUGG- -5'
391 3' -58.9 AC_000011.1 + 8413 0.67 0.352431
Target:  5'- gGCGGCUgGGGCGACggGGgcGgUGCCu -3'
miRNA:   3'- -UGCUGGgCCCGUUGgaCCuuCgGUGG- -5'
391 3' -58.9 AC_000011.1 + 21158 0.67 0.344884
Target:  5'- cGCGACCUGGGCugcgggcccuacuuCCUGGG---CACCu -3'
miRNA:   3'- -UGCUGGGCCCGuu------------GGACCUucgGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.