Results 1 - 5 of 5 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
391 | 5' | -54.7 | AC_000011.1 | + | 20906 | 0.67 | 0.519584 |
Target: 5'- gUUGCUGgagaaggggaugcGCCAcaugACCcuGUCGCAGAGGAa -3' miRNA: 3'- -AACGAC-------------UGGU----UGGc-CAGCGUCUUCUa -5' |
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391 | 5' | -54.7 | AC_000011.1 | + | 6840 | 0.68 | 0.466144 |
Target: 5'- -gGCaGuCCGACCGaGUCGCGGAuGAa -3' miRNA: 3'- aaCGaCuGGUUGGC-CAGCGUCUuCUa -5' |
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391 | 5' | -54.7 | AC_000011.1 | + | 7724 | 0.69 | 0.395119 |
Target: 5'- -aGCUcGACgAGCCGGUCGUccccGGAGAg -3' miRNA: 3'- aaCGA-CUGgUUGGCCAGCGu---CUUCUa -5' |
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391 | 5' | -54.7 | AC_000011.1 | + | 8134 | 0.7 | 0.348862 |
Target: 5'- aUGCUGACgAGCCcG-CGCGGGAGGc -3' miRNA: 3'- aACGACUGgUUGGcCaGCGUCUUCUa -5' |
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391 | 5' | -54.7 | AC_000011.1 | + | 12912 | 1.03 | 0.001381 |
Target: 5'- uUUGCUGACCAACCGGUCGCAGAAGAUc -3' miRNA: 3'- -AACGACUGGUUGGCCAGCGUCUUCUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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